View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5284_high_8 (Length: 491)
Name: NF5284_high_8
Description: NF5284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5284_high_8 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 392; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 12 - 473
Target Start/End: Complemental strand, 17168186 - 17167725
Alignment:
| Q |
12 |
acagaaacaggttataaaagtctccgatataccggaaaactccacagccaaaaccctatagctcccaaaaaatctggtgccgctaaaaacaacagcagaa |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |
|
|
| T |
17168186 |
acagaaacaggttataaaagtctccgatataccggaaaactccacagccaaaaccctatagctcccaaaaaatctggtgctgctaaaaacaacaacagaa |
17168087 |
T |
|
| Q |
112 |
acagaactcaggcaaacaacagactggcagagcgccctgcatctagaaacagaaaagctgatgctgctgtatgcaaactgacagcaggcnnnnnnnnnnn |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
17168086 |
acagaactcaggcaaacaacagactggcagagctccctgcagctagaaacagaaaaactgatgctgctgtatgcaaactgacagcaggcaaaaaaaacaa |
17167987 |
T |
|
| Q |
212 |
nnntgcagactccgcataccactgcctcagccactaaactgcaacaggaaccgctcccctatctaagcaagcactcctttggatcccaaagccattcgta |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17167986 |
aaatgcagactccgcataccactgcctcagccactaaactgcaacaggaaccgctcccctatctaagcaagcactcctttggatcccaaagccattcgta |
17167887 |
T |
|
| Q |
312 |
gaacatacaaaccagcgaattcatccggctcaaccaccatcttcaagacaaaaccttgatggcctccaccaactcgtccacctcaccaattttgttattg |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17167886 |
gaacatacaaaccagcgaattcatccggctcaaccaccatctccaagacaaaaccttgatggcctccaccaactcgtccacctcaccaattttgttattg |
17167787 |
T |
|
| Q |
412 |
aaaattctgtcatttctaaccctccaaatgctccacaccaccgcatgccaaatcgtccgaaa |
473 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
17167786 |
aaaattctgtcatttctaaccctccaaatgctccacaccaccgcatgctaaatcgtccgaaa |
17167725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 283 - 473
Target Start/End: Complemental strand, 26853193 - 26853003
Alignment:
| Q |
283 |
cactcctttggatcccaaagccattcgtagaacatacaaaccagcgaattcatccggctcaaccaccatcttcaagacaaaaccttgatggcctccacca |
382 |
Q |
| |
|
||||||||||| | |||| ||||||| |||||||||||| || | ||||| |||| ||| |||||| ||||| || ||||||||| | ||||| | |
|
|
| T |
26853193 |
cactcctttgggttccaatgccattcatagaacatacaagccggagaattggaccggtccaaatgccatctccaagataagaccttgatgtcgtccacta |
26853094 |
T |
|
| Q |
383 |
actcgtccacctcaccaattttgttattgaaaattctgtcatttctaaccctccaaatgctccacaccaccgcatgccaaatcgtccgaaa |
473 |
Q |
| |
|
| |||||||| |||||||| || || |||||||| || |||||| | ||| || ||||| |||||||||||||||||| ||||||| |
|
|
| T |
26853093 |
gagcatccacctctccaattttattgttaaaaattctatcgtttctagcatgccatatactccataccaccgcatgccaaatcatccgaaa |
26853003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 405 - 464
Target Start/End: Complemental strand, 17103660 - 17103601
Alignment:
| Q |
405 |
gttattgaaaattctgtcatttctaaccctccaaatgctccacaccaccgcatgccaaat |
464 |
Q |
| |
|
||||||||| || | ||| ||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
17103660 |
gttattgaagatacggtcgtttctcgccatccaaatgctccacaccaccgcatgccaaat |
17103601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 388 - 473
Target Start/End: Original strand, 20040401 - 20040486
Alignment:
| Q |
388 |
tccacctcaccaattttgttattgaaaattctgtcatttctaaccctccaaatgctccacaccaccgcatgccaaatcgtccgaaa |
473 |
Q |
| |
|
||||| || |||||||| || ||||||||||| ||||| ||| | | |||||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
20040401 |
tccacttctccaattttattgttgaaaattctatcattcctagctcgccaaatactccacaccaccgcatgccaaatcatccgaaa |
20040486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 286 - 465
Target Start/End: Complemental strand, 10509383 - 10509205
Alignment:
| Q |
286 |
tcctttggatcccaaagccattcgtagaacatacaaaccagcgaattcatccggctcaaccaccatcttcaagacaaaaccttgatggcctccaccaact |
385 |
Q |
| |
|
|||||||||| |||| ||||||| |||||||||||| || | ||||| |||| |||| |||||| | | ||| ||||||||| ||||||| | |
|
|
| T |
10509383 |
tcctttggattccaatgccattcatagaacatacaagccggagaattggaccggtccaactgccatctcccac-caagaccttgatgtcctccacaagtg |
10509285 |
T |
|
| Q |
386 |
cgtccacctcaccaattttgttattgaaaattctgtcatttctaaccctccaaatgctccacaccaccgcatgccaaatc |
465 |
Q |
| |
|
| |||||||| |||||||| || ||||||||||| || |||||| | | ||| ||||||||||| ||||||||||||||| |
|
|
| T |
10509284 |
catccacctctccaattttattgttgaaaattctatcgtttctagcacaccagatgctccacactaccgcatgccaaatc |
10509205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University