View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5284_low_15 (Length: 355)
Name: NF5284_low_15
Description: NF5284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5284_low_15 |
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| [»] scaffold0157 (1 HSPs) |
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| [»] scaffold0229 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 16 - 339
Target Start/End: Original strand, 12464204 - 12464527
Alignment:
| Q |
16 |
ataagtactaaaacataaaagataatccttgttccccttatgtaacataaatagagcaagaaatacataattctaaaggaaagaaagtacacattgctaa |
115 |
Q |
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|||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12464204 |
ataagtactaaaacataaaagataatccttcctcccctgatgtaacataaatagagcaagaaatacataattctaaaggaaagaaagtacacattgctaa |
12464303 |
T |
|
| Q |
116 |
tcaccaaacataaactccagacaagcaagatgcaaacttcctcaagcatcacctagatcctgtgaaatgtttgcaacatcccaaacgcataaacacaatt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |||||||| |
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| T |
12464304 |
tcaccaaacataaactccagacaagcaagatgcaaacttcctcaagcatcacctagattctgtgaaatgtctgcaacatcccaaacgcatagacacaatt |
12464403 |
T |
|
| Q |
216 |
aatgagtggacgagtaatcgtgttacatgatttataacaataatttcaggacaaaaatggaaaaaatatacacatagaaaaacaatgcatagattatgac |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |
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| T |
12464404 |
aatgagtggacgagtaatcgtgttacatgatttataacaataatttcaggacaaaagtggaaaaaatatacacataggaaaacaatgcatagattatgac |
12464503 |
T |
|
| Q |
316 |
actataatagtataatgttcatag |
339 |
Q |
| |
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|||| ||||||||||||||||||| |
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| T |
12464504 |
actaaaatagtataatgttcatag |
12464527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 180 - 339
Target Start/End: Original strand, 12482936 - 12483097
Alignment:
| Q |
180 |
aaatgtttgcaacatcccaaacgcataaacacaa-ttaatgagtggacgagtaatcgtgttacatgatttataacaataatttcaggacaaaaatgg-aa |
277 |
Q |
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|||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| || |
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| T |
12482936 |
aaatgtctgcaacatcggaaacgcataaacacaaattaatgagtggacgagtaatcgtggtacatgatttataacaataaattcaggacaaaaatggaaa |
12483035 |
T |
|
| Q |
278 |
aaaatatacacatagaaaaacaatgcatagattatgacactataatagtataatgttcatag |
339 |
Q |
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|||||||||||||| ||||| ||||||||||||||||||| || |||||||||||||||| |
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| T |
12483036 |
aaaatatacacataagaaaaccatgcatagattatgacactgaaaaagtataatgttcatag |
12483097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 17 - 185
Target Start/End: Original strand, 12474023 - 12474193
Alignment:
| Q |
17 |
taagtactaaaacataaaagataa-tccttgttccccttatgtaacataaatagagcaagaaatacataattctaaaggaaagaaagtacacattgctaa |
115 |
Q |
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||||||| ||||||||| || ||| |||||||| || | ||||||||||||||||| ||| | ||||||||| |||||||||||||||||||||| || |
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| T |
12474023 |
taagtaccaaaacataataggtaaatccttgtttccttgatgtaacataaatagagaaaggtaaacataattccaaaggaaagaaagtacacattgtcaa |
12474122 |
T |
|
| Q |
116 |
tca-ccaaacataaactccagacaagcaagatgcaaacttcctcaagcatcacctagatcctgtgaaatgt |
185 |
Q |
| |
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||| ||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||| |||||||| |
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| T |
12474123 |
tcaaccaaacataaactccagacaagcaagatgaaaatttcctcaagcatcacttagatcctatgaaatgt |
12474193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 17 - 185
Target Start/End: Original strand, 12528432 - 12528602
Alignment:
| Q |
17 |
taagtactaaaacataaaagataa-tccttgttccccttatgtaacataaatagagcaagaaatacataattctaaaggaaagaaagtacacattgctaa |
115 |
Q |
| |
|
||||||| ||||||||| || ||| |||||||| || | ||||||||||||||||| ||| | ||||||||| |||||||||||||||||||||| || |
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| T |
12528432 |
taagtaccaaaacataataggtaaatccttgtttccttgatgtaacataaatagagaaaggtaaacataattccaaaggaaagaaagtacacattgtcaa |
12528531 |
T |
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| Q |
116 |
tca-ccaaacataaactccagacaagcaagatgcaaacttcctcaagcatcacctagatcctgtgaaatgt |
185 |
Q |
| |
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||| ||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||| |||||||| |
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| T |
12528532 |
tcaaccaaacataaactccagacaagcaagatgaaaatttcctcaagcatcacttagatcctatgaaatgt |
12528602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0157 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: scaffold0157
Description:
Target: scaffold0157; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 180 - 339
Target Start/End: Complemental strand, 37541 - 37380
Alignment:
| Q |
180 |
aaatgtttgcaacatcccaaacgcataaacacaa-ttaatgagtggacgagtaatcgtgttacatgatttataacaataatttcaggacaaaaatggaa- |
277 |
Q |
| |
|
|||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |
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| T |
37541 |
aaatgtctgcaacatcggaaacgcataaacacaaattaatgagtggacgagtaatcgtggtacatgatttataacaataaattcaggacaaaaatggaaa |
37442 |
T |
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| Q |
278 |
aaaatatacacatagaaaaacaatgcatagattatgacactataatagtataatgttcatag |
339 |
Q |
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|||||||||||||| ||||| ||||||||||||||||||| || |||||||||||||||| |
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| T |
37441 |
aaaatatacacataagaaaaccatgcatagattatgacactgaaaaagtataatgttcatag |
37380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0229 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: scaffold0229
Description:
Target: scaffold0229; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 17 - 185
Target Start/End: Complemental strand, 12855 - 12685
Alignment:
| Q |
17 |
taagtactaaaacataaaagataa-tccttgttccccttatgtaacataaatagagcaagaaatacataattctaaaggaaagaaagtacacattgctaa |
115 |
Q |
| |
|
||||||| ||||||||| || ||| |||||||| || | ||||||||||||||||| ||| | ||||||||| |||||||||||||||||||||| || |
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| T |
12855 |
taagtaccaaaacataataggtaaatccttgtttccttgatgtaacataaatagagaaaggtaaacataattccaaaggaaagaaagtacacattgtcaa |
12756 |
T |
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| Q |
116 |
tca-ccaaacataaactccagacaagcaagatgcaaacttcctcaagcatcacctagatcctgtgaaatgt |
185 |
Q |
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||| ||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||| |||||||| |
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| T |
12755 |
tcaaccaaacataaactccagacaagcaagatgaaaatttcctcaagcatcacttagatcctatgaaatgt |
12685 |
T |
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