View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5284_low_17 (Length: 334)
Name: NF5284_low_17
Description: NF5284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5284_low_17 |
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| [»] chr8 (7 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 334; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 334
Target Start/End: Complemental strand, 34927235 - 34926902
Alignment:
| Q |
1 |
ttggaaatgacaccttactggataaaacttttaagctacacctaaacacgttaaggtaagtctaaaactattatttttcaagtactaatatttctagtga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34927235 |
ttggaaatgacaccttactggataaaacttttaagctacacctaaacacgttaaggtaagtctaaaactattatttttcaagtactaatatttctagtga |
34927136 |
T |
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| Q |
101 |
agctttaataagtcacatatgtgtctgtgtgtgtatactttcttcaaaatcaggcgaagaggtgcagttttgattgacaatttgaagattgataacattg |
200 |
Q |
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| T |
34927135 |
agctttaataagtcacatatgtgtctgtgtgtgtatactttcttcaaaatcaggcgaagaggtgcagttttgattgacaatttgaagattgataacattg |
34927036 |
T |
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| Q |
201 |
ttgaaattttcactgatcaaagtgaacaaattgccttgaattttgaattcaaattatccttgaataagtacctgaaagaattagttgcttcaccagtgaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34927035 |
ttgaaattttcactgatcaaagtgaacaaattgccttgaattttgaattcaaattatccttgaataagtacctgaaagaattagttgcttcaccagtgaa |
34926936 |
T |
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| Q |
301 |
aagcttggcagatgtgatagccttcaacaagaaa |
334 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
34926935 |
aagcttggcagatgtgatagccttcaacaagaaa |
34926902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 334
Target Start/End: Complemental strand, 34932155 - 34931816
Alignment:
| Q |
1 |
ttggaaatgacaccttactggataaaacttttaagctacacctaaacacgttaaggtaagtctaaaactattatttttcaagtactaatatttctagtga |
100 |
Q |
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| T |
34932155 |
ttggaaatgacaccttattgaataaaacttttaagctacacttaaacacattaaggtaagtctaaaactattatttctcatgtactaatatttctaatga |
34932056 |
T |
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| Q |
101 |
agctttaataagtcacatatgtgtctgt------gtgtgtatactttcttcaaaatcaggcgaagaggtgcagttttgattgacaatttgaagattgata |
194 |
Q |
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| T |
34932055 |
agcttcaataagtcacatatgtgtgtgtctgtgtgtgtgtgtactttcttcaaaatcaggcgaagaggtgcagttttgattgacaacttgaagattgata |
34931956 |
T |
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| Q |
195 |
acattgttgaaattttcactgatcaaagtgaacaaattgccttgaattttgaattcaaattatccttgaataagtacctgaaagaattagttgcttcacc |
294 |
Q |
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| T |
34931955 |
atattgtagaaatttacactgatcaaagtgaagaaattgcattgagttttgaattcaaattatccttgaataagtacctgaaagacttagttgcttcacc |
34931856 |
T |
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| Q |
295 |
agtgaaaagcttggcagatgtgatagccttcaacaagaaa |
334 |
Q |
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| T |
34931855 |
agtgaaaagcttggcagatgtgatagccttcaacaagaaa |
34931816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 149 - 334
Target Start/End: Complemental strand, 34896819 - 34896634
Alignment:
| Q |
149 |
atcaggcgaagaggtgcagttttgattgacaatttgaagattgataacattgttgaaattttcactgatcaaagtgaacaaattgccttgaattttgaat |
248 |
Q |
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||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||| || |||||||||||| ||||| ||||| ||||||| |
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| T |
34896819 |
atcaggcaaagaggtgcagttttggttgacaatttgaagattgataacattgatgaaattatcagtggtcaaagtgaacagattgctttgaagtttgaat |
34896720 |
T |
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| Q |
249 |
tcaaattatccttgaataagtacctgaaagaattagttgcttcaccagtgaaaagcttggcagatgtgatagccttcaacaagaaa |
334 |
Q |
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| T |
34896719 |
tcaaattatccgtgaatgcatacctcaaagatttggttgcttcgccagtgaaaagcttggcagatgtgatagccttcaacaagaaa |
34896634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 149 - 327
Target Start/End: Complemental strand, 34910316 - 34910138
Alignment:
| Q |
149 |
atcaggcgaagaggtgcagttttgattgacaatttgaagattgataacattgttgaaattttcactgatcaaagtgaacaaattgccttgaattttgaat |
248 |
Q |
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||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||| || || ||||||| ||||| ||||| ||||||| |
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| T |
34910316 |
atcaggcaaagaggtgcagttttggttgacaatttgaagattgataacattgatgaaattctcagtgctccaagtgaatctattgctttgaactttgaat |
34910217 |
T |
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| Q |
249 |
tcaaattatccttgaataagtacctgaaagaattagttgcttcaccagtgaaaagcttggcagatgtgatagccttcaa |
327 |
Q |
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| T |
34910216 |
tcaaattatcattgaatgaatacctgaaagatttagtagcttcaccggtgaacagtttggcagatgtgatagccttcaa |
34910138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 149 - 334
Target Start/End: Complemental strand, 34920260 - 34920075
Alignment:
| Q |
149 |
atcaggcgaagaggtgcagttttgattgacaatttgaagattgataacattgttgaaattttcactgatcaaagtgaacaaattgccttgaattttgaat |
248 |
Q |
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||||||| ||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||| ||||| |||||| | ||||| |||||||||||| |
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| T |
34920260 |
atcaggcagagaggtgcagttttggttgacaatttgaagattgataacattgatgaaattatcagtgatccaagtgaggagattgctatgaattttgaat |
34920161 |
T |
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| Q |
249 |
tcaaattatccttgaataagtacctgaaagaattagttgcttcaccagtgaaaagcttggcagatgtgatagccttcaacaagaaa |
334 |
Q |
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| T |
34920160 |
tcaaattatcattgaatgcatacctcaaagacttagtagcatcgccagtgagaagcttggcagatgtgatagccttcaacaagaaa |
34920075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 34897587 - 34897477
Alignment:
| Q |
1 |
ttggaaatgacaccttactggataaaacttttaagctacacctaaacacgttaagg----taagtctaaaactattatttttcaagtactaatatttcta |
96 |
Q |
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||||||||||||| || || || ||||||| |||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||| | ||| |
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| T |
34897587 |
ttggaaatgacacttttatgcatgaaactttcaagctacacctaaacacgttaaggtaactaagtctaaaactattatttgtcaagtcttaatactgcta |
34897488 |
T |
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| Q |
97 |
gtgaagcttta |
107 |
Q |
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|||||||||| |
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| T |
34897487 |
atgaagcttta |
34897477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 58
Target Start/End: Complemental strand, 34921049 - 34920995
Alignment:
| Q |
4 |
gaaatgacaccttactggataaaacttttaagctacacctaaacacgttaaggta |
58 |
Q |
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|||||||||| || | |||||||||||| ||||||||||| || ||||||||||| |
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| T |
34921049 |
gaaatgacacttttccggataaaactttcaagctacacctgaaaacgttaaggta |
34920995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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