View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5284_low_18 (Length: 329)
Name: NF5284_low_18
Description: NF5284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5284_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 290; Significance: 1e-163; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 34926901 - 34926592
Alignment:
| Q |
1 |
cacccaaaatcggtgagtatgtatattgaatattagaactatgttattttttacgaccagtttgcttcacgactgtaagaatcaactgataacatttgat |
100 |
Q |
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| T |
34926901 |
cacccaaaatcggtgagtatgtatatagaatattagaactatgttattttttacgaccagtttgcttcacgactgtaagaatcaactgataacatttgat |
34926802 |
T |
|
| Q |
101 |
tgttactatttgtgccatgcctatttgttacataaatttcagctatgaacattgatcacgatagcatcttaattgttgtataaacattgtaggagaaact |
200 |
Q |
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| T |
34926801 |
tgttactatttgtgccatgcctatttgttacataaagtccagctatgaacattgatcacgatagcatcttaattgttgtataaacattgtaggagaaact |
34926702 |
T |
|
| Q |
201 |
tgagtatggccaagatctcatggagcaagctgaaaagacaaatggaattgggaaagcagagaaacaagcattattaaatatgacaagatcgtcacagaat |
300 |
Q |
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| T |
34926701 |
tgagtatggccaagatctcatggtgcaagctgaaaagacaaacggaattgggaaagcagagaaacaagcattattaaatatgacaagatcgtcacagaat |
34926602 |
T |
|
| Q |
301 |
gggtttgaaa |
310 |
Q |
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|||||||||| |
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| T |
34926601 |
gggtttgaaa |
34926592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 34931815 - 34931501
Alignment:
| Q |
1 |
cacccaaaatcggtgagtatgtatattgaatattagaactatgttatttttt-acgaccagtttgcttcacga-ctgtaagaatcaactgataacatttg |
98 |
Q |
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|||||||||| ||||||||||||||||| |||| |||||||||||||||||| || | || | |||||||||| ||||| |||||| ||||||||||||| |
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| T |
34931815 |
cacccaaaattggtgagtatgtatattgtatataagaactatgttatttttttacaatcaatgtgcttcacgaactgtacgaatcagctgataacatttg |
34931716 |
T |
|
| Q |
99 |
attgttactatttgtgccatgcctatttgttacataaa-----tttcagctatgaacattgatcacgatagcatcttaattgttgtataaacattgtagg |
193 |
Q |
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| T |
34931715 |
attgttactatttgtgccatgcctatttgttacataaagcatttctcattaattaacatcaatcacgatagcatcttaattgttgtacaaacattgtagg |
34931616 |
T |
|
| Q |
194 |
agaaacttgagtatggccaagatctcatggagcaagctgaaaagacaaatggaattgggaaagcagagaaacaagcattattaaatatgacaagatcgtc |
293 |
Q |
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||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||| ||| |
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| T |
34931615 |
agaaacttgggtatggccaagatgtcatggtgcaagctgaaaagacaaatggaattggtaaagcagaaaaacaagcattattaaacatgacaagatggtc |
34931516 |
T |
|
| Q |
294 |
acagaatgggtttga |
308 |
Q |
| |
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||| ||||||||||| |
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| T |
34931515 |
acaaaatgggtttga |
34931501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 155 - 308
Target Start/End: Complemental strand, 34896559 - 34896406
Alignment:
| Q |
155 |
atcacgatagcatcttaattgttgtataaacattgtaggagaaacttgagtatggccaagatctcatggagcaagctgaaaagacaaatggaattgggaa |
254 |
Q |
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| T |
34896559 |
atcacgataggatcttaattgttatataaaagttgtaggagaaaatggagtatggccaagatgtcatggtgcaagctgaaaagacaaatggaattggtaa |
34896460 |
T |
|
| Q |
255 |
agcagagaaacaagcattattaaatatgacaagatcgtcacagaatgggtttga |
308 |
Q |
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| T |
34896459 |
agcagaaaaacaagcattattaaacatgacaagatggtcagaaaatgggtttga |
34896406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 151 - 308
Target Start/End: Complemental strand, 34910052 - 34909896
Alignment:
| Q |
151 |
attgatcacgatagcatcttaattgttgtataaacattgtaggagaaacttgagtatggccaagatctcatggagcaagctgaaaagacaaatggaattg |
250 |
Q |
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||||||||| |||| |||| |||||||||||||| ||||||||||||| | ||||||||||||||| | ||| |||||||||||||||||| || ||| |
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| T |
34910052 |
attgatcactatagaatctgaattgttgtataaa-attgtaggagaaaatggagtatggccaagatgtattggtgcaagctgaaaagacaaacggttttg |
34909954 |
T |
|
| Q |
251 |
ggaaagcagagaaacaagcattattaaatatgacaagatcgtcacagaatgggtttga |
308 |
Q |
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|||||||||| ||| |||||||||| |||||| |||||| |||| | ||||||||||| |
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| T |
34909953 |
ggaaagcagaaaaagaagcattattgaatatgtcaagatggtcagaaaatgggtttga |
34909896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 170 - 308
Target Start/End: Complemental strand, 34919992 - 34919851
Alignment:
| Q |
170 |
taattgttgtataaacattgtaggagaaacttga---gtatggccaagatctcatggagcaagctgaaaagacaaatggaattgggaaagcagagaaaca |
266 |
Q |
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||||||||||||||| |||||||||| ||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||| | | ||||| | |
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| T |
34919992 |
taattgttgtataaaaattgtaggaggaacttgataagtatggccaagatatcatgttgcaagctgaaaagacaaatggaattggaagtatacagaaaga |
34919893 |
T |
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| Q |
267 |
agcattattaaatatgacaagatcgtcacagaatgggtttga |
308 |
Q |
| |
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| T |
34919892 |
agcattattaaacatgacaagatggtcagaaaatgggtttga |
34919851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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