View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5284_low_2 (Length: 710)
Name: NF5284_low_2
Description: NF5284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5284_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 649; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 649; E-Value: 0
Query Start/End: Original strand, 20 - 692
Target Start/End: Complemental strand, 30001382 - 30000711
Alignment:
| Q |
20 |
aacacatctgaaattctccacaaacttctaaaagactcatatttctttaagaataacataacaatcaaacttgaaacttatatcttccaagttccaatat |
119 |
Q |
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| T |
30001382 |
aacacatctgaaattctccgcaaacttctaaaagactcatatttctttaagaataacataacaatcaaacttgaaact-atatcttccaagttccaatat |
30001284 |
T |
|
| Q |
120 |
cctcaacctaaagtcaatgtgcttaaaatgaacaaagtaactcacccagtatctgtatgccacaatttcagctggtgtattatcaggatcacaagacccc |
219 |
Q |
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| T |
30001283 |
cctcaacctaaagtcaatgtgcttaaaatgaacaaagtaactcacccagtatctgtatgccacaatttcagctggtgtattatcaggatcacaagacccc |
30001184 |
T |
|
| Q |
220 |
aaactaatctgcttcacagcttcaatctgcacagcttcaggatcctcctttgcactcaactccaaagccaattttaattgatactcttcctccacttcat |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30001183 |
aaactaatctgcttcacagcttcaatctgcacagcttcaggatcctcctttgcactcaactccaaagccaattttaattgatactcttcctccacttcat |
30001084 |
T |
|
| Q |
320 |
gatcccttgaaccaattgcacaacaacctgtatcacgcctatccgaatccgaaacaacatccaaaccaacatttctcacaatatcagatgattccacttc |
419 |
Q |
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|||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30001083 |
gatcccttgaaccaattgcacaacaacccgtatcatgtctatccgaatccgaaacaacatccaaaccaacatttctcacaatatcagatgattccacttc |
30000984 |
T |
|
| Q |
420 |
catcctctcaacttttccttggttcaaagatgtagaactaagattcttcctattaacaactgaatgcaaccaactagaactcaaaagcctcatagatgat |
519 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30000983 |
catcctctcaacttttccttggttcaaagatgtagaactaagattcttcctattaacaactgaatgcaaccaactagaactcaaaagcctcatagatgat |
30000884 |
T |
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| Q |
520 |
gaaccatgatttgacttgtttccctctgatgaagcaatcctttgttcattttctgatttcttagacatgctatgaaacttcttaagaatgtttttcatat |
619 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30000883 |
gaaccatgatttgacttgtttccctctgatgaagcaatcctttgttcattttctgatttcttagacatgctatgaaacttcttaagaatgtttttcatat |
30000784 |
T |
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| Q |
620 |
cttttactcttaaagtttttacatgcactaaacgatctcagccattaatttgaaaccagactgtccaaattac |
692 |
Q |
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| T |
30000783 |
cttttactcttaaagtttttacatgcactaaacgatctcagccattaatttgaaaccagactgtccaaattac |
30000711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 77; Significance: 2e-35; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 163 - 331
Target Start/End: Complemental strand, 45199361 - 45199193
Alignment:
| Q |
163 |
acccagtatctgtatgccacaatttcagctggtgtattatcaggatcacaagaccccaaactaatctgcttcacagcttcaatctgcacagcttcaggat |
262 |
Q |
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|||||||||| |||||| |||| ||||||||||||||||||||| | |||||| |||||||| || ||||| |||||||||||||| ||||| || |||| |
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| T |
45199361 |
acccagtatcggtatgcgacaacttcagctggtgtattatcagggtgacaagatcccaaactgatttgcttaacagcttcaatctgtacagcctcgggat |
45199262 |
T |
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| Q |
263 |
cctcctttgcactcaactccaaagccaattttaattgatactcttcctccacttcatgatcccttgaac |
331 |
Q |
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||||||||||||||| ||| ||||| | | | |||||| ||||| ||||||||| |||||||||||| |
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| T |
45199261 |
cctcctttgcactcagctctaaagcaagctgaatttgatattcttcttccacttcaggatcccttgaac |
45199193 |
T |
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