View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5284_low_23 (Length: 288)
Name: NF5284_low_23
Description: NF5284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5284_low_23 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 148; Significance: 4e-78; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 22 - 180
Target Start/End: Complemental strand, 131378 - 131217
Alignment:
| Q |
22 |
gtaatatattgcagaaacc---aggctcctcaagccatattccttacatggcaacaccgccggcagtcccgttatataatcaggttccttcctactaccc |
118 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
131378 |
gtaatatattgcagaaacctgcaggctcctcaagccatattccttacatggcaacaccgccggcagtcccgttatataatcaggttccttcctactaccc |
131279 |
T |
|
| Q |
119 |
acagcaacaaccacactctaattatcacaatccagcaatacctgctgctgctgcttctgctt |
180 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
131278 |
acagcaacaaccacactctaattatcacaatccagcaatacctgctgctgctgcttctgctt |
131217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 23 - 165
Target Start/End: Original strand, 161578 - 161720
Alignment:
| Q |
23 |
taatatattgcagaaaccaggctcctcaagccatattccttacatggcaa---caccgccggcagtcccgttatataatcaggttccttcctactaccca |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| || | |||| || ||||||||||||| | ||||||||| |||||||||||||||||| |
|
|
| T |
161578 |
taatatattgcagaaaccaggctcctcaagccatactccctatacagcaatgccaacgccggcagtcccatcatataatcacgttccttcctactaccca |
161677 |
T |
|
| Q |
120 |
cagcaacaaccacactctaattatcacaatccagcaatacctgctg |
165 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||| |||||||| |
|
|
| T |
161678 |
---caacaaccacactctaattatcaccatccaacaacacctgctg |
161720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University