View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5284_low_26 (Length: 252)
Name: NF5284_low_26
Description: NF5284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5284_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 103; Significance: 2e-51; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 11 - 113
Target Start/End: Complemental strand, 24558295 - 24558193
Alignment:
| Q |
11 |
cacagagtcaggtaaaccctaaacacgcagccacttttcaacgttttcttcaaaccccattcgccgcttttcaactcttcatcacctttccaaggttcat |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24558295 |
cacagagtcaggtaaaccctaaacacgcagccacttttcaacgttttcttcaaaccccattcgccgcttttcaactcttcatcacctttccaaggttcat |
24558196 |
T |
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| Q |
111 |
acg |
113 |
Q |
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||| |
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| T |
24558195 |
acg |
24558193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 11 - 113
Target Start/End: Complemental strand, 24555242 - 24555140
Alignment:
| Q |
11 |
cacagagtcaggtaaaccctaaacacgcagccacttttcaacgttttcttcaaaccccattcgccgcttttcaactcttcatcacctttccaaggttcat |
110 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24555242 |
cacagagtcaggtaaaccctacacacgcagccacttttcaacgttttcttcaaaccccattcgccgcttttcaactcttcatcacctttccaaggttcat |
24555143 |
T |
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| Q |
111 |
acg |
113 |
Q |
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||| |
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| T |
24555142 |
acg |
24555140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 12 - 113
Target Start/End: Complemental strand, 24552156 - 24552055
Alignment:
| Q |
12 |
acagagtcaggtaaaccctaaacacgcagccacttttcaacgttttcttcaaaccccattcgccgcttttcaactcttcatcacctttccaaggttcata |
111 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24552156 |
acagagtcaggtaaaccctaaacacacagccacttttcaacgttttcttcaaaccccattcgccgcttttcaactcttcatcacctttccaaggttcata |
24552057 |
T |
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| Q |
112 |
cg |
113 |
Q |
| |
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|| |
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| T |
24552056 |
cg |
24552055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 172 - 252
Target Start/End: Complemental strand, 24551996 - 24551916
Alignment:
| Q |
172 |
gttggaacaatggtatataaggaagaagaagnnnnnnnntgaaaactttctttatatttcaactttccttcaacccctttt |
252 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |
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| T |
24551996 |
gttggaacaatggtatataaggaagaagaagaaaaaaaatgaaaactttctttgtatttcaactttccttcaacccctttt |
24551916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 172 - 252
Target Start/End: Complemental strand, 24555075 - 24554996
Alignment:
| Q |
172 |
gttggaacaatggtatataaggaagaagaagnnnnnnnntgaaaactttctttatatttcaactttccttcaacccctttt |
252 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |
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| T |
24555075 |
gttggaacaatggtatataaggaagaagaa-aaaaaaaatgaaaactttctttgtatttcaactttccttcaacccctttt |
24554996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 172 - 252
Target Start/End: Complemental strand, 24558134 - 24558054
Alignment:
| Q |
172 |
gttggaacaatggtatataaggaagaagaagnnnnnnnntgaaaactttctttatatttcaactttccttcaacccctttt |
252 |
Q |
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||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |
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| T |
24558134 |
gttggaaatatggtatataaggaagaagaagaaaaaaaatgaaaactttctttgtatttcaactttccttcaacccctttt |
24558054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 211 - 252
Target Start/End: Original strand, 24544335 - 24544376
Alignment:
| Q |
211 |
tgaaaactttctttatatttcaactttccttcaacccctttt |
252 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||| |
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| T |
24544335 |
tgaaaactttctttgtatttcaactttccttcaacccctttt |
24544376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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