View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5284_low_27 (Length: 243)
Name: NF5284_low_27
Description: NF5284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5284_low_27 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 181; Significance: 6e-98; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 21 - 243
Target Start/End: Complemental strand, 24544707 - 24544487
Alignment:
| Q |
21 |
ttcgcatattgaatattgtatttcctaaagaaacaatattaataatataagaggattcatgaagcaacaatccagatatgcagaacagaacagtgcaata |
120 |
Q |
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| T |
24544707 |
ttcgcatattgaatattgtatttcctaaagaaacaatattaataatataagaggattcatgaagcaacaatccagatatgcagaacagaacagtgcaata |
24544608 |
T |
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| Q |
121 |
atgannnnnnnnnngcttatatacactgagcataagaagaaacgtgagagggaagagatattaagataggggtaaaatggtaatattttaatgggttgaa |
220 |
Q |
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| T |
24544607 |
atgattttttttc--cttatatacactgagcataagaagaaacgtgagagggaagagatattaagataggggtaaaatgataatattttaatgggttgaa |
24544510 |
T |
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| Q |
221 |
atataaataaagttttcattttt |
243 |
Q |
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||||||||||||||||||||||| |
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| T |
24544509 |
atataaataaagttttcattttt |
24544487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 21 - 243
Target Start/End: Original strand, 24557724 - 24557942
Alignment:
| Q |
21 |
ttcgcatattgaatattgtatttcctaaagaaacaatattaataatataagaggattcatgaagcaacaatccagatatgcagaacagaacagtgcaata |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
24557724 |
ttcgcatattgaatattgtatttcctaaagaaacaatattaataatataagaggattcattaagcaacaatccagatatgcagaacagaacagtgcaata |
24557823 |
T |
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| Q |
121 |
atgannnnnnnnnngcttatatacactgagcataagaagaaacgtgagagggaagagatattaagataggggtaaaatggtaatattttaatgggttgaa |
220 |
Q |
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| T |
24557824 |
atgattttttc----cttatatacactaagcataagaagaaacgtgagagggaagagatattaagataggggtaaaatgataatattttaatgggttgaa |
24557919 |
T |
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| Q |
221 |
atataaataaagttttcattttt |
243 |
Q |
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| T |
24557920 |
atataaataaagttttcattttt |
24557942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 21 - 243
Target Start/End: Original strand, 24554663 - 24554884
Alignment:
| Q |
21 |
ttcgcatattgaatattgtatttcctaaagaaacaatattaataatataagaggattcatgaagcaacaatccagatatgcagaacagaacagtgcaata |
120 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |
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| T |
24554663 |
ttcgcatattgaatattgtatttcctaaagaaacaatattaataatataagaggattcattaagcaacaatccagatatgcagaacagaatagtgcaata |
24554762 |
T |
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| Q |
121 |
atgannnnnnnnnngcttatatacactgagcataagaagaaacgtgagagggaagagatattaagata-ggggtaaaatggtaatattttaatgggttga |
219 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |
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| T |
24554763 |
atgattttttttc--cttatatacactgagcataagaagaaacgtgagagggaagagatattaagatagggggtaaaatgataatattttaatgggttga |
24554860 |
T |
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| Q |
220 |
aatataaataaagttttcattttt |
243 |
Q |
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| T |
24554861 |
aatataaataaagttttcattttt |
24554884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 160 - 243
Target Start/End: Original strand, 24551722 - 24551805
Alignment:
| Q |
160 |
aaacgtgagagggaagagatattaagataggggtaaaatggtaatattttaatgggttgaaatataaataaagttttcattttt |
243 |
Q |
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| T |
24551722 |
aaacgtgagagggaagagatattaagataggggtaaaatgataatattttaatgggatgaaatataaataaagttttcattttt |
24551805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 91
Target Start/End: Original strand, 38760800 - 38760864
Alignment:
| Q |
25 |
catattgaatattgtatttcctaaagaaacaatattaataatataagaggattcatgaagcaacaat |
91 |
Q |
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||||||||||||||||||| || || |||||||||||||| || |||||||||||||||||||| |
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| T |
38760800 |
catattgaatattgtattttcttaaaaaacaatattaata--tcaaaaggattcatgaagcaacaat |
38760864 |
T |
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