View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5284_low_3 (Length: 679)

Name: NF5284_low_3
Description: NF5284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5284_low_3
NF5284_low_3
[»] chr7 (10 HSPs)
chr7 (4-657)||(38321882-38322532)
chr7 (464-626)||(38156926-38157086)
chr7 (456-539)||(38149146-38149229)
chr7 (461-539)||(38172402-38172480)
chr7 (461-511)||(42797587-42797637)
chr7 (461-539)||(43028400-43028478)
chr7 (475-539)||(45999761-45999825)
chr7 (579-626)||(38187148-38187195)
chr7 (480-539)||(38285464-38285522)
chr7 (482-539)||(37884240-37884297)
[»] chr6 (2 HSPs)
chr6 (485-626)||(4163428-4163570)
chr6 (485-626)||(4225049-4225191)
[»] chr3 (1 HSPs)
chr3 (477-539)||(2222867-2222928)


Alignment Details
Target: chr7 (Bit Score: 587; Significance: 0; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 587; E-Value: 0
Query Start/End: Original strand, 4 - 657
Target Start/End: Complemental strand, 38322532 - 38321882
Alignment:
Q  4 ggaggagcagagatcatgcccttttttgcaatgcagaacgcgtctgacaaggaactacatggctgtaacagaannnnnnnataaaataaaaaggtaaaac 103  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||    
T  38322532 ggagcagcagagatcatgcccttttttgcaatgcagaacgcgtctgacaaggaactacatggctgtaacagagtttttttataaaataaaaaggtaaaac 38322433  T
Q  104 tatgaaaattcttgtgtcgagagaaacaactcgacttctctgggtgtatgggatacaatgaaaaatcaagagaaaactaataaggtaaatgacagaacat 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  38322432 tatgaaaattcttgtgtcgagagaaacaactcgacttctctgggtgtatgggatacaatgaaaaatcaagagaaaactaagaaggtaaatgacagaacat 38322333  T
Q  204 ttgaatgttagaagaagaagaagtgcaaaagacttccagtggccgaagttgcctcagtatgactatgacacagcaaatgtgttgcaataaaatattatag 303  Q
    ||||||||||||||||||||   |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  38322332 ttgaatgttagaagaagaag---tgcaaaagacttccagtggccgaagttgcctcagtacgactatgacacagcaaatgtgttgcaataaaatattatag 38322236  T
Q  304 gcttgataattcaaatttcaaaatgaataatatagtcctcataaaaatctgaaaaattactactgaggattttgtttaggcaacagttgaggtattaaac 403  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  38322235 gcttgataattcaaatttcaaaatgaataatatagtcctcataaaaatctgaaaaattactactgaggattttttttaggcaacagttgagatattaaac 38322136  T
Q  404 agcctcgttaaaatactagatgcaacatcttcaagggaggctcacccatatggaaagaataaacatcaaccagcaaacatgggttttgactgactcacct 503  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  38322135 agcctcgttaaaatactagatgcaacatcttcaagggaggctcacccatatggaaagaataaacatcaactggcaaacatgggttttgactgactcacct 38322036  T
Q  504 gtgaagggctcatgaccatagctaaattctcgatattacttattgtgcaattgcaccaaagggactgtgtagacatttctttctcttagctgtattccaa 603  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38322035 gtgaagggctcatgaccatagctaaattctcgatattacttattgtgcaattgcaccaaagggactgtgtagacatttctttctcttagctgtattccaa 38321936  T
Q  604 aaaaccttcaataaccttggagcggtaacatcaaagtccatcgtagtgtcacca 657  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38321935 aaaaccttcaataaccttggagcggtaacatcaaagtccatcgtagtgtcacca 38321882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 464 - 626
Target Start/End: Original strand, 38156926 - 38157086
Alignment:
Q  464 aaacatcaaccagcaaacatgggttttgactgactcacctgtgaagggctcatgaccatagctaaattctcgatat-tacttattgtgcaattgcaccaa 562  Q
    |||||||||| ||||||| ||| |||||| |||||||||||||||| |||||| | ||||| ||||||||| |||| || | ||  |||||||| |||||    
T  38156926 aaacatcaacaagcaaacttggtttttgagtgactcacctgtgaagtgctcataatcatagataaattctcaatatgtagtaatcttgcaattggaccaa 38157025  T
Q  563 agggactgtgtagacatttctttctcttagctgtattccaaaaaaccttcaataaccttggagc 626  Q
    |||||   ||  ||  ||| | ||| ||||||| ||||||||||| |||||||||| |||||||    
T  38157026 aggga---tgctgatttttttctcttttagctgcattccaaaaaagcttcaataacattggagc 38157086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 456 - 539
Target Start/End: Original strand, 38149146 - 38149229
Alignment:
Q  456 gaaagaataaacatcaaccagcaaacatgggttttgactgactcacctgtgaagggctcatgaccatagctaaattctcgatat 539  Q
    |||| |||||||||||||||| |||| ||| ||||||  ||||||||||||||| ||| |||| ||||| |||||||| |||||    
T  38149146 gaaacaataaacatcaaccagaaaacgtggtttttgagcgactcacctgtgaagtgcttatgatcatagataaattctggatat 38149229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 461 - 539
Target Start/End: Original strand, 38172402 - 38172480
Alignment:
Q  461 aataaacatcaaccagcaaacatgggttttgactgactcacctgtgaagggctcatgaccatagctaaattctcgatat 539  Q
    |||||||||||| || |||||||| ||||| ||| |||||||||||||| |||||||| ||||| ||| ||||| ||||    
T  38172402 aataaacatcaagcaacaaacatgagttttaacttactcacctgtgaagtgctcatgatcatagttaagttctcaatat 38172480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 461 - 511
Target Start/End: Complemental strand, 42797637 - 42797587
Alignment:
Q  461 aataaacatcaaccagcaaacatgggttttgactgactcacctgtgaaggg 511  Q
    ||||||||||||| |||||||||||||||||| ||||||||| ||||||||    
T  42797637 aataaacatcaactagcaaacatgggttttgagtgactcaccagtgaaggg 42797587  T

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Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 461 - 539
Target Start/End: Complemental strand, 43028478 - 43028400
Alignment:
Q  461 aataaacatcaaccagcaaacatgggttttgactgactcacctgtgaagggctcatgaccatagctaaattctcgatat 539  Q
    |||||||| |||| |||||||| ||||||||| |||||||||||||||| ||| |||  || |||||||||||| ||||    
T  43028478 aataaacaccaactagcaaacacgggttttgagtgactcacctgtgaagtgctgatgttcacagctaaattctcaatat 43028400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 475 - 539
Target Start/End: Original strand, 45999761 - 45999825
Alignment:
Q  475 agcaaacatgggttttgactgactcacctgtgaagggctcatgaccatagctaaattctcgatat 539  Q
    ||||||||||| ||| |||  |||||||||||||||||| |||| ||||||||||||||| ||||    
T  45999761 agcaaacatggatttagacaaactcacctgtgaagggctgatgatcatagctaaattctcaatat 45999825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 579 - 626
Target Start/End: Original strand, 38187148 - 38187195
Alignment:
Q  579 tttctttctcttagctgtattccaaaaaaccttcaataaccttggagc 626  Q
    ||||| ||| ||||||| ||||||||||||||||||||| ||||||||    
T  38187148 tttctctctattagctgcattccaaaaaaccttcaataaacttggagc 38187195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 480 - 539
Target Start/End: Original strand, 38285464 - 38285522
Alignment:
Q  480 acatgggttttgactgactcacctgtgaagggctcatgaccatagctaaattctcgatat 539  Q
    ||||||||||||||| ||||||||||||| || |||||  ||||||||||||||| ||||    
T  38285464 acatgggttttgact-actcacctgtgaatgggtcatggtcatagctaaattctcaatat 38285522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 482 - 539
Target Start/End: Complemental strand, 37884297 - 37884240
Alignment:
Q  482 atgggttttgactgactcacctgtgaagggctcatgaccatagctaaattctcgatat 539  Q
    |||| |||||||  |||||||| |||||||||||||||||| |||||| |||| ||||    
T  37884297 atggattttgaccaactcacctatgaagggctcatgaccattgctaaagtctcaatat 37884240  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 485 - 626
Target Start/End: Original strand, 4163428 - 4163570
Alignment:
Q  485 ggttttgactgactcacctgtgaagggctcatgaccatagctaaattctcgatattac-ttattgtgcaattgcaccaaagggactgtgtagacatttct 583  Q
    ||||||||||||||||||||||||||  |||||| ||||||||||||||  | || || | ||  || ||||||||||||| ||   ||| || || |||    
T  4163428 ggttttgactgactcacctgtgaaggcatcatgatcatagctaaattctgaacatgacgtgatcttggaattgcaccaaagagatgatgtggatatctct 4163527  T
Q  584 ttctcttagctgtattccaaaaaaccttcaataaccttggagc 626  Q
     |  ||||| || ||||||||||||||||||||||||||||||    
T  4163528 cttccttagttgcattccaaaaaaccttcaataaccttggagc 4163570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 485 - 626
Target Start/End: Original strand, 4225049 - 4225191
Alignment:
Q  485 ggttttgactgactcacctgtgaagggctcatgaccatagctaaattctcgatattac-ttattgtgcaattgcaccaaagggactgtgtagacatttct 583  Q
    ||||||||||||||||||||||||||  |||||| ||||||||||||||  | || || | ||  || ||||||||||||| ||   ||| || || |||    
T  4225049 ggttttgactgactcacctgtgaaggcatcatgatcatagctaaattctgaacatgacgtgatcttggaattgcaccaaagagatgatgtggatatctct 4225148  T
Q  584 ttctcttagctgtattccaaaaaaccttcaataaccttggagc 626  Q
     |  ||||| || ||||||||||||||||||||||||||||||    
T  4225149 cttccttagttgcattccaaaaaaccttcaataaccttggagc 4225191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 477 - 539
Target Start/End: Original strand, 2222867 - 2222928
Alignment:
Q  477 caaacatgggttttgactgactcacctgtgaagggctcatgaccatagctaaattctcgatat 539  Q
    |||||||| ||||||||| ||||||||||||| |||| |||  ||||||||||||||| ||||    
T  2222867 caaacatgagttttgact-actcacctgtgaatggctaatggtcatagctaaattctcaatat 2222928  T

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