View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5284_low_30 (Length: 234)

Name: NF5284_low_30
Description: NF5284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5284_low_30
NF5284_low_30
[»] chr7 (8 HSPs)
chr7 (47-218)||(41832573-41832744)
chr7 (47-217)||(41830168-41830338)
chr7 (47-217)||(8083389-8083559)
chr7 (47-204)||(25432047-25432205)
chr7 (44-110)||(7737386-7737452)
chr7 (46-127)||(48821854-48821937)
chr7 (79-127)||(23613779-23613827)
chr7 (47-178)||(35130552-35130683)
[»] scaffold0862 (1 HSPs)
scaffold0862 (47-218)||(189-360)
[»] chr8 (9 HSPs)
chr8 (47-218)||(7275144-7275315)
chr8 (47-217)||(7277749-7277919)
chr8 (47-216)||(13856639-13856809)
chr8 (54-195)||(3567495-3567639)
chr8 (47-84)||(5690859-5690896)
chr8 (54-111)||(29864498-29864555)
chr8 (47-110)||(4678181-4678243)
chr8 (49-110)||(4676236-4676296)
chr8 (47-76)||(12464815-12464844)
[»] chr5 (11 HSPs)
chr5 (47-218)||(21256587-21256758)
chr5 (47-217)||(21254116-21254286)
chr5 (47-217)||(26873161-26873331)
chr5 (75-217)||(31339166-31339309)
chr5 (47-110)||(43233900-43233963)
chr5 (48-131)||(4730657-4730741)
chr5 (47-194)||(15531387-15531535)
chr5 (47-84)||(41949333-41949370)
chr5 (47-84)||(41951731-41951768)
chr5 (144-194)||(15531594-15531644)
chr5 (53-126)||(15543694-15543767)
[»] chr6 (8 HSPs)
chr6 (47-217)||(30689634-30689804)
chr6 (47-217)||(8655827-8655991)
chr6 (47-136)||(6825508-6825597)
chr6 (47-127)||(24249778-24249858)
chr6 (46-136)||(6823034-6823124)
chr6 (54-171)||(1136235-1136353)
chr6 (47-124)||(4555733-4555810)
chr6 (164-201)||(31792317-31792354)
[»] scaffold0525 (1 HSPs)
scaffold0525 (46-218)||(2027-2199)
[»] chr2 (7 HSPs)
chr2 (46-218)||(24039425-24039597)
chr2 (47-217)||(24038231-24038401)
chr2 (45-219)||(31180184-31180357)
chr2 (47-218)||(31269463-31269633)
chr2 (47-195)||(36402684-36402832)
chr2 (49-110)||(36316286-36316347)
chr2 (46-86)||(600484-600524)
[»] chr1 (5 HSPs)
chr1 (47-217)||(18705708-18705878)
chr1 (47-217)||(12436186-12436356)
chr1 (46-86)||(2427330-2427370)
chr1 (62-217)||(50038529-50038685)
chr1 (144-209)||(35267574-35267639)
[»] chr4 (11 HSPs)
chr4 (47-218)||(2546987-2547158)
chr4 (63-217)||(20880054-20880209)
chr4 (46-161)||(5444744-5444860)
chr4 (47-127)||(35783779-35783859)
chr4 (47-110)||(27510483-27510546)
chr4 (47-127)||(4167574-4167654)
chr4 (53-217)||(7785283-7785451)
chr4 (7-45)||(31482161-31482199)
chr4 (74-127)||(4174755-4174808)
chr4 (144-217)||(20879962-20880035)
chr4 (47-86)||(21215019-21215058)
[»] scaffold0023 (1 HSPs)
scaffold0023 (47-217)||(111544-111714)
[»] scaffold0251 (1 HSPs)
scaffold0251 (81-217)||(4583-4719)
[»] scaffold0655 (1 HSPs)
scaffold0655 (48-218)||(611-782)
[»] chr3 (16 HSPs)
chr3 (47-217)||(10018777-10018948)
chr3 (47-217)||(10256091-10256262)
chr3 (47-217)||(10179974-10180145)
chr3 (47-183)||(10123317-10123454)
chr3 (47-209)||(8504202-8504365)
chr3 (46-127)||(782837-782918)
chr3 (47-217)||(19954451-19954622)
chr3 (47-161)||(10661756-10661871)
chr3 (46-161)||(10511026-10511141)
chr3 (46-161)||(10514350-10514466)
chr3 (47-127)||(10613346-10613426)
chr3 (62-217)||(10744728-10744885)
chr3 (47-84)||(17743104-17743141)
chr3 (47-84)||(19044424-19044461)
chr3 (47-85)||(548458-548496)
chr3 (47-127)||(27825693-27825774)
[»] scaffold0001 (2 HSPs)
scaffold0001 (47-136)||(144661-144750)
scaffold0001 (47-136)||(146720-146809)
[»] scaffold0959 (1 HSPs)
scaffold0959 (47-97)||(408-458)
[»] scaffold0263 (1 HSPs)
scaffold0263 (46-176)||(22919-23049)
[»] scaffold0017 (1 HSPs)
scaffold0017 (53-161)||(182992-183102)


Alignment Details
Target: chr7 (Bit Score: 168; Significance: 4e-90; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 47 - 218
Target Start/End: Complemental strand, 41832744 - 41832573
Alignment:
Q  47 tgttaggaaacatggcatccatggaaggaatgagagaaaactaagaaactctttctattgatgaaaatggaatattacaaaatgagaaaagtaccctcta 146  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  41832744 tgttaggaaacatggcatccatggaaggaatgagagaaaactaagaaactctttctattgatgaaaattgaatattacaaaatgagaaaagtaccctcta 41832645  T
Q  147 atggggtggttacaagttatttatactactctctactaggactaatatgctactaatctatatctctaatag 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41832644 atggggtggttacaagttatttatactactctctactaggactaatatgctactaatctatatctctaatag 41832573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 47 - 217
Target Start/End: Complemental strand, 41830338 - 41830168
Alignment:
Q  47 tgttaggaaacatggcatccatggaaggaatgagagaaaactaagaaactctttctattgatgaaaatggaatattacaaaatgagaaaagtaccctcta 146  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||    
T  41830338 tgttaggaaacatgtcatccatggaaggaatgagagaaaactaagaaactctttctattgatgtaaattgaatattacaaaatgagaaaagttccctcta 41830239  T
Q  147 atggggtggttacaagttatttatactactctctactaggactaatatgctactaatctatatctctaata 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41830238 atggggtggttacaagttatttatactactctctactaggactaatatgctactaatctatatctctaata 41830168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 47 - 217
Target Start/End: Original strand, 8083389 - 8083559
Alignment:
Q  47 tgttaggaaacatggcatccatggaaggaatgagagaaaactaagaaactctttctattgatgaaaatggaatattacaaaatgagaaaagtaccctcta 146  Q
    |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||| |||||||    
T  8083389 tgttaggaaacatggcatccatggaaggaaggagagaaaactaaaaaactctttctattgatgaaaatgaaatattacaaaatgacaaaagttccctcta 8083488  T
Q  147 atggggtggttacaagttatttatactactctctactaggactaatatgctactaatctatatctctaata 217  Q
    |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  8083489 atggggtggttagaagttatttatactactctttactaggactaatatgctactaatctatatctttaata 8083559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 47 - 204
Target Start/End: Complemental strand, 25432205 - 25432047
Alignment:
Q  47 tgttaggaaacatggcatccatggaaggaatgagagaaaactaagaaact-ctttctattgatgaaaatggaatattacaaaatgaga-aaagtaccctc 144  Q
    ||||| |||||||||||||||||||||||||||||||||  ||  ||| | |||| |||||||| |||| ||||||||| || ||||  ||||| ||| |    
T  25432205 tgttatgaaacatggcatccatggaaggaatgagagaaatgtagcaaagttctttatattgatggaaattgaatattacgaa-tgagtgaaagtgcccac 25432107  T
Q  145 taatggggtggttacaagttatttatactactctctactaggactaatatgctactaatc 204  Q
    |||||||||||||||||| |||||||| |||| |||| |||||||||||| | |||||||    
T  25432106 taatggggtggttacaagctatttatagtactatctattaggactaatataccactaatc 25432047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 44 - 110
Target Start/End: Complemental strand, 7737452 - 7737386
Alignment:
Q  44 agctgttaggaaacatggcatccatggaaggaatgagagaaaactaagaaactctttctattgatga 110  Q
    |||||||||||||||||  |||||  ||||||||||||||||||||||| | |||||||||||||||    
T  7737452 agctgttaggaaacatgatatccaatgaaggaatgagagaaaactaagagaatctttctattgatga 7737386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 127
Target Start/End: Original strand, 48821854 - 48821937
Alignment:
Q  46 ctgttaggaaacatggcatccatggaaggaatgagagaaaactaagaaactctttctattgatga-aaatg-gaatattacaaa 127  Q
    |||||| ||||||||  ||||||||||| |||||||||||||| ||| | | ||||||||||||| ||||| ||||||||||||    
T  48821854 ctgttatgaaacatgatatccatggaagaaatgagagaaaactcagagaatttttctattgatgataaatgtgaatattacaaa 48821937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 127
Target Start/End: Complemental strand, 23613827 - 23613779
Alignment:
Q  79 agagaaaactaagaaactctttctattgatgaaaatggaatattacaaa 127  Q
    |||||||||||| ||||||||| |||||||| ||||| |||||||||||    
T  23613827 agagaaaactaacaaactctttttattgatggaaatgaaatattacaaa 23613779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 178
Target Start/End: Complemental strand, 35130683 - 35130552
Alignment:
Q  47 tgttaggaaacatggcatccatggaaggaatgagagaaaactaagaaactctttctattgatga-aaatggaatattacaaaatgagaaaagt-accctc 144  Q
    ||||||||||||||  |||||  ||||||||||||||||||| | | | | ||| ||||||||| |||  ||||||||| |||||||  || | |||| |    
T  35130683 tgttaggaaacatgatatccaatgaaggaatgagagaaaactcaaataatgtttgtattgatgataaagtgaatattac-aaatgagtgaattaacccac 35130585  T
Q  145 taatggggtggttacaagttatttatactactct 178  Q
    |||||||||||||||||  ||| |||||||||||    
T  35130584 taatggggtggttacaa-ctatatatactactct 35130552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0862 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: scaffold0862
Description:

Target: scaffold0862; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 47 - 218
Target Start/End: Complemental strand, 360 - 189
Alignment:
Q  47 tgttaggaaacatggcatccatggaaggaatgagagaaaactaagaaactctttctattgatgaaaatggaatattacaaaatgagaaaagtaccctcta 146  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  360 tgttaggaaacatggcatccatgaaaggaaggagagaaaactaagaaactctttctattgatgaaaatggaatattacaaaatgagaaaagttccctcta 261  T
Q  147 atggggtggttacaagttatttatactactctctactaggactaatatgctactaatctatatctctaatag 218  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  260 atggggtggttacaagttatttatactattctctactaggactaatatgctactaatctatatctctaatag 189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 156; Significance: 5e-83; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 47 - 218
Target Start/End: Original strand, 7275144 - 7275315
Alignment:
Q  47 tgttaggaaacatggcatccatggaaggaatgagagaaaactaagaaactctttctattgatgaaaatggaatattacaaaatgagaaaagtaccctcta 146  Q
    ||||||||||||||| ||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7275144 tgttaggaaacatggtatccatgaaaagaaggagagaaaactaagaaactctttctattgatgaaaatggaatattacaaaatgagaaaagtaccctcta 7275243  T
Q  147 atggggtggttacaagttatttatactactctctactaggactaatatgctactaatctatatctctaatag 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7275244 atggggtggttacaagttatttatactactctctactaggactaatatgctactaatctatatctctaatag 7275315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 47 - 217
Target Start/End: Original strand, 7277749 - 7277919
Alignment:
Q  47 tgttaggaaacatggcatccatggaaggaatgagagaaaactaagaaactctttctattgatgaaaatggaatattacaaaatgagaaaagtaccctcta 146  Q
    ||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7277749 tgttaggaaacatggtatccatggaaagaaggagagaaaactaagaaactctttctattgatgaaaatggaatattacaaaatgagaaaagtaccctcta 7277848  T
Q  147 atggggtggttacaagttatttatactactctctactaggactaatatgctactaatctatatctctaata 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  7277849 atggggtggttacaagttatttatactactctctactaggactaatatgctaataatctatatctctaata 7277919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 47 - 216
Target Start/End: Complemental strand, 13856809 - 13856639
Alignment:
Q  47 tgttaggaaacatggcatccatggaaggaatgagagaaaactaagaaactctttctattgatgaaaatggaatattacaaaatgaga-aaagta-ccctc 144  Q
    ||||| |||||||| ||||||||||| ||| |||||||||||||  ||| |||| |||||||  |||||||||| |||||| ||||  |||||| |||||    
T  13856809 tgttatgaaacatgacatccatggaaagaaggagagaaaactaacgaacactttgtattgatagaaatggaatactacaaa-tgagtgaaagtaaccctc 13856711  T
Q  145 taatggggtggttacaagttatttatactactctctactaggactaatatgctactaatctatatctctaat 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  13856710 taatggggtggttacaagttatttatactactctctactaggactaatatgccactaatctatatctctaat 13856639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 54 - 195
Target Start/End: Original strand, 3567495 - 3567639
Alignment:
Q  54 aaacatggcatccatggaaggaatgagagaaaactaagaaactctttctattgatgaaaatggaatattacaaaatgag---aaaagta-ccctctaatg 149  Q
    ||||||| ||||| ||||||||| || ||||| |||| ||||||||| ||||||||||||||||||||||| |||||||   ||||||| |||||||||     
T  3567495 aaacatgacatccgtggaaggaaggaaagaaatctaacaaactctttgtattgatgaaaatggaatattac-aaatgagtgaaaaagtatccctctaata 3567593  T
Q  150 gggtggttacaagttatttatactactctctactaggactaatatg 195  Q
    ||||||||||| ||||||||||||||||||| ||||||||||||||    
T  3567594 gggtggttacaggttatttatactactctctgctaggactaatatg 3567639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 84
Target Start/End: Complemental strand, 5690896 - 5690859
Alignment:
Q  47 tgttaggaaacatggcatccatggaaggaatgagagaa 84  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  5690896 tgttatgaaacatggcatccatggaaggaatgagagaa 5690859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 111
Target Start/End: Original strand, 29864498 - 29864555
Alignment:
Q  54 aaacatggcatccatggaaggaatgagagaaaactaagaaactctttctattgatgaa 111  Q
    ||||||||||||||| |||| ||  |||||||| ||| ||||||||||||||||||||    
T  29864498 aaacatggcatccatagaagaaaatagagaaaattaacaaactctttctattgatgaa 29864555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 110
Target Start/End: Complemental strand, 4678243 - 4678181
Alignment:
Q  47 tgttaggaaacatggcatccatggaaggaatgagagaaaactaagaaactctttctattgatga 110  Q
    ||||||||||||||  ||||| | |||||||||||||||||||||| | | |||||||||||||    
T  4678243 tgttaggaaacatgatatccacg-aaggaatgagagaaaactaagagaatatttctattgatga 4678181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 110
Target Start/End: Complemental strand, 4676296 - 4676236
Alignment:
Q  49 ttaggaaacatggcatccatggaaggaatgagagaaaactaagaaactctttctattgatga 110  Q
    ||||||||||||  ||||| | |||||||||||||||||||||| | | |||||||||||||    
T  4676296 ttaggaaacatgatatccacg-aaggaatgagagaaaactaagagaatatttctattgatga 4676236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 76
Target Start/End: Complemental strand, 12464844 - 12464815
Alignment:
Q  47 tgttaggaaacatggcatccatggaaggaa 76  Q
    ||||||||||||||||||||||||||||||    
T  12464844 tgttaggaaacatggcatccatggaaggaa 12464815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 156; Significance: 5e-83; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 47 - 218
Target Start/End: Complemental strand, 21256758 - 21256587
Alignment:
Q  47 tgttaggaaacatggcatccatggaaggaatgagagaaaactaagaaactctttctattgatgaaaatggaatattacaaaatgagaaaagtaccctcta 146  Q
    |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  21256758 tgttaggaaacatggcatccatggaaggaaggagagaaaactaacaaactctttctattgatgaaaatggaatattacaaaatgagaaaagttccctcta 21256659  T
Q  147 atggggtggttacaagttatttatactactctctactaggactaatatgctactaatctatatctctaatag 218  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  21256658 atggggtggttacaagttatttatactactctctactatgactaatatgctactaatctatatctctaatag 21256587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 47 - 217
Target Start/End: Complemental strand, 21254286 - 21254116
Alignment:
Q  47 tgttaggaaacatggcatccatggaaggaatgagagaaaactaagaaactctttctattgatgaaaatggaatattacaaaatgagaaaagtaccctcta 146  Q
    |||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||| |||||||    
T  21254286 tgttaggaaacatggcatccatggaaggaaggagagaaaagtaacaaactctttctattgatgaaaaaggaatattacaaaatgagaaaagttccctcta 21254187  T
Q  147 atggggtggttacaagttatttatactactctctactaggactaatatgctactaatctatatctctaata 217  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21254186 atggggcggttacaagttatttatactactctctactaggactaatatgctactaatctatatctctaata 21254116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 47 - 217
Target Start/End: Original strand, 26873161 - 26873331
Alignment:
Q  47 tgttaggaaacatggcatccatggaaggaatgagagaaaactaagaaactctttctattgatgaaaatggaatattacaaaatgagaaaagtaccctcta 146  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||  ||||||    
T  26873161 tgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaactctttctattgatggaaatagaatattacgaaatgagaaaagtttcctcta 26873260  T
Q  147 atggggtggttacaagttatttatactactctctactaggactaatatgctactaatctatatctctaata 217  Q
    ||||  || ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  26873261 atggaatgattacaagttatttttactactctctactaggactaatatgctactaatctatatctctaata 26873331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 75 - 217
Target Start/End: Original strand, 31339166 - 31339309
Alignment:
Q  75 aatgagagaaaactaagaaactctttctattgatgaaaatggaatattacaaaatgagaaaagt-accctctaatggggtggttacaagttatttatact 173  Q
    |||||||||||||||||||||||||||||| |||| |||| |||||||||||||||||  || | |||| ||||||||||||||||||||||||||||||    
T  31339166 aatgagagaaaactaagaaactctttctatcgatggaaattgaatattacaaaatgagtgaattgacccactaatggggtggttacaagttatttatact 31339265  T
Q  174 actctctactaggactaatatgctactaatctatatctctaata 217  Q
    |||||||||||||||||||||  || || || ||||||||||||    
T  31339266 actctctactaggactaatataatattattcaatatctctaata 31339309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 47 - 110
Target Start/End: Complemental strand, 43233963 - 43233900
Alignment:
Q  47 tgttaggaaacatggcatccatggaaggaatgagagaaaactaagaaactctttctattgatga 110  Q
    |||||||||||||||||||||||||||||||||||||||||| | | | |||||||||||||||    
T  43233963 tgttaggaaacatggcatccatggaaggaatgagagaaaactcaaagaatctttctattgatga 43233900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 48 - 131
Target Start/End: Complemental strand, 4730741 - 4730657
Alignment:
Q  48 gttaggaaacatggcatccatggaaggaatgagagaaaa--ctaagaaactctttctattgatgaaaatggaatattacaaaatga 131  Q
    |||||||||||||||||||||||| | || |||| ||||  |||| ||||||||| |||||||| |||||||||||||||||||||    
T  4730741 gttaggaaacatggcatccatggatg-aaggagaaaaaaagctaacaaactctttgtattgatggaaatggaatattacaaaatga 4730657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 47 - 194
Target Start/End: Original strand, 15531387 - 15531535
Alignment:
Q  47 tgttaggaaacatggcatccatggaaggaatgagagaaaactaagaaactctttctattgatgaaaatggaatattacaaaatgaga-aaagtaccctct 145  Q
    ||||| |||||| | ||| ||| |||| |||||||||||| | |  |||| ||| |||||||||| ||  ||  ||||||||||||  ||||| ||| ||    
T  15531387 tgttatgaaacacgacattcatagaagaaatgagagaaaagtgaataactatttgtattgatgaagatataaagttacaaaatgagtgaaagttcccact 15531486  T
Q  146 aatggggtggttacaagttatttatactactctctactaggactaatat 194  Q
    ||||||||||||||||  |||||||| |||| |||| ||||||||||||    
T  15531487 aatggggtggttacaaactatttatagtactatctattaggactaatat 15531535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 84
Target Start/End: Original strand, 41949333 - 41949370
Alignment:
Q  47 tgttaggaaacatggcatccatggaaggaatgagagaa 84  Q
    ||||||||||||||||||||||||||||||||||||||    
T  41949333 tgttaggaaacatggcatccatggaaggaatgagagaa 41949370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 84
Target Start/End: Original strand, 41951731 - 41951768
Alignment:
Q  47 tgttaggaaacatggcatccatggaaggaatgagagaa 84  Q
    ||||||||||||||||||||||||||||||||||||||    
T  41951731 tgttaggaaacatggcatccatggaaggaatgagagaa 41951768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 194
Target Start/End: Original strand, 15531594 - 15531644
Alignment:
Q  144 ctaatggggtggttacaagttatttatactactctctactaggactaatat 194  Q
    ||||| ||||||||||||| |||||||| |||| |||| ||||||||||||    
T  15531594 ctaattgggtggttacaagctatttatagtactatctattaggactaatat 15531644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 126
Target Start/End: Original strand, 15543694 - 15543767
Alignment:
Q  53 gaaacatggcatccatggaaggaatgagagaaaactaagaaactctttctattgatgaaaatggaatattacaa 126  Q
    |||||||| ||||||| ||| ||||||||||||| |||  ||||| || |||||||| |||| |||| ||||||    
T  15543694 gaaacatgccatccatagaatgaatgagagaaaagtaactaactcattgtattgatggaaattgaatgttacaa 15543767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 155; Significance: 2e-82; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 47 - 217
Target Start/End: Original strand, 30689634 - 30689804
Alignment:
Q  47 tgttaggaaacatggcatccatggaaggaatgagagaaaactaagaaactctttctattgatgaaaatggaatattacaaaatgagaaaagtaccctcta 146  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||    
T  30689634 tgttaggaaacatggcatccatgaaaggaatgagagaaaactaagaaactctttctattgatgaaagtgaaatattacaaaatgagaaaagtaccctcta 30689733  T
Q  147 atggggtggttacaagttatttatactactctctactaggactaatatgctactaatctatatctctaata 217  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30689734 atggggtggttacaaattatttatactactctctactaggactaatatgctactaatctatatctctaata 30689804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 47 - 217
Target Start/End: Original strand, 8655827 - 8655991
Alignment:
Q  47 tgttaggaaacatggcatccatggaaggaatgagagaaaactaagaaactctttctattgatgaaaatggaatattacaaaatgagaaaagtaccctcta 146  Q
    |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||    
T  8655827 tgttaggaaacatggcatccatagaaggaaggagagaaaactaagaaactctttctattgatggaaatggaatattacaaaatgagaaaagttccctcta 8655926  T
Q  147 atggggtggttacaagttatttatactactctctactaggactaatatgctactaatctatatctctaata 217  Q
    ||||||||||||||||||||||||||||||||||      |||||||||||| ||||||||||||||||||    
T  8655927 atggggtggttacaagttatttatactactctct------actaatatgctattaatctatatctctaata 8655991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 47 - 136
Target Start/End: Original strand, 6825508 - 6825597
Alignment:
Q  47 tgttaggaaacatggcatccatggaaggaatgagagaaaactaagaaactctttctattgatgaaaatggaatattacaaaatgagaaaa 136  Q
    |||||||||||||||||||||||||||||| |||| ||| |||| ||||||||| |||||||  ||||||||||||||||||||||||||    
T  6825508 tgttaggaaacatggcatccatggaaggaaggagataaatctaacaaactctttgtattgatagaaatggaatattacaaaatgagaaaa 6825597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 47 - 127
Target Start/End: Complemental strand, 24249858 - 24249778
Alignment:
Q  47 tgttaggaaacatggcatccatggaaggaatgagagaaaactaagaaactctttctattgatgaaaatggaatattacaaa 127  Q
    ||||||||||||||||||| ||| || ||||||||||||||||| ||||||||| |||| ||| |||||||||||||||||    
T  24249858 tgttaggaaacatggcatcaatgtaaagaatgagagaaaactaacaaactctttgtattaatggaaatggaatattacaaa 24249778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 46 - 136
Target Start/End: Original strand, 6823034 - 6823124
Alignment:
Q  46 ctgttaggaaacatggcatccatggaaggaatgagagaaaactaagaaactctttctattgatgaaaatggaatattacaaaatgagaaaa 136  Q
    ||||||| ||||||| ||| ||||||||||| |||| ||| |||| ||||||||| |||||||  ||||||||||||||||||||||||||    
T  6823034 ctgttagaaaacatgacattcatggaaggaaggagataaatctaacaaactctttgtattgatagaaatggaatattacaaaatgagaaaa 6823124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 54 - 171
Target Start/End: Original strand, 1136235 - 1136353
Alignment:
Q  54 aaacatggcatccatggaaggaatgagagaaaactaagaaa-ctctttctattgatgaaaatggaatattacaaaatgag-aaaagtaccctctaatggg 151  Q
    ||||||| ||||||||||||||||||||||||  ||  ||| |||||| |||||||| |||| ||||||||| |||||||  |||||  || ||||||||    
T  1136235 aaacatgacatccatggaaggaatgagagaaatatagcaaatctctttatattgatggaaattgaatattac-aaatgagtgaaagtgtccactaatggg 1136333  T
Q  152 gtggttacaagttatttata 171  Q
    |||| |||| | ||||||||    
T  1136334 gtgggtacacgctatttata 1136353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 124
Target Start/End: Complemental strand, 4555810 - 4555733
Alignment:
Q  47 tgttaggaaacatggcatccatggaaggaatgagagaaaactaagaaactctttctattgatgaaaatggaatattac 124  Q
    |||||||||||||||||||||| ||  ||| |||  ||| |||| ||||||||| |||||||  ||||| ||||||||    
T  4555810 tgttaggaaacatggcatccatagatcgaaggagcaaaatctaacaaactctttgtattgatagaaatgaaatattac 4555733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 201
Target Start/End: Complemental strand, 31792354 - 31792317
Alignment:
Q  164 tatttatactactctctactaggactaatatgctacta 201  Q
    ||||||||||||| |||||||||||||||| |||||||    
T  31792354 tatttatactactatctactaggactaatacgctacta 31792317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0525 (Bit Score: 153; Significance: 3e-81; HSPs: 1)
Name: scaffold0525
Description:

Target: scaffold0525; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 46 - 218
Target Start/End: Original strand, 2027 - 2199
Alignment:
Q  46 ctgttaggaaacatggcatccatggaaggaatgagagaaaactaagaaactctttctattgatgaaaatggaatattacaaaatgagaaaagtaccctct 145  Q
    ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||    
T  2027 ctgttgggaaacatggcatccatggaaggaaggagagaaaactaagaaactctttctattgatggaaatggaatattacaaaatgagaaaagttccctct 2126  T
Q  146 aatggggtggttacaagttatttatactactctctactaggactaatatgctactaatctatatctctaatag 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  2127 aatggggtggttacaagttatttatactactctctactaggactaatatgctattaatctatatctctaatag 2199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 153; Significance: 3e-81; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 46 - 218
Target Start/End: Complemental strand, 24039597 - 24039425
Alignment:
Q  46 ctgttaggaaacatggcatccatggaaggaatgagagaaaactaagaaactctttctattgatgaaaatggaatattacaaaatgagaaaagtaccctct 145  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  24039597 ctgttagaaaacatggcatccatggaaggaatgagagaaaactaagaaactttttctattgatgaaaatggaatattacaatatgagaaaagtgccctct 24039498  T
Q  146 aatggggtggttacaagttatttatactactctctactaggactaatatgctactaatctatatctctaatag 218  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24039497 aatgaggtggttacaagttatttatactactctctactaggactaatatgctactaatctatatctctaatag 24039425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 47 - 217
Target Start/End: Complemental strand, 24038401 - 24038231
Alignment:
Q  47 tgttaggaaacatggcatccatggaaggaatgagagaaaactaagaaactctttctattgatgaaaatggaatattacaaaatgagaaaagtaccctcta 146  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  24038401 tgttagaaaacatggcatccatggaaggaatgagagaaaactaagaaactttttctattgatgaaaatggaatattacaatatgagaaaagtgccctcta 24038302  T
Q  147 atggggtggttacaagttatttatactactctctactaggactaatatgctactaatctatatctctaata 217  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24038301 atggagtggttacaagttatttatactactctctactaggactaatatgctactaatctatatctctaata 24038231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 45 - 219
Target Start/End: Complemental strand, 31180357 - 31180184
Alignment:
Q  45 gctgttaggaaacatggcatccatggaaggaatgagagaaaactaagaaactctttctattgatgaaaatggaatattacaaaatgagaaaagtaccctc 144  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||    
T  31180357 gctgttaggaagcatggcatccatggaaggaaggagagaaaactaagaaactctttctattgatggaaatggaatattacaaaatgagaaaagt-ccctc 31180259  T
Q  145 taatggggtggttacaagttatttatactactctctactaggactaatatgctactaatctatatctctaataga 219  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31180258 taatggggtggttagaagttatttatactactctctactaggactaatatgctactaatctatatctctaataga 31180184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 47 - 218
Target Start/End: Original strand, 31269463 - 31269633
Alignment:
Q  47 tgttaggaaacatggcatccatggaaggaatgagagaaaactaagaaactctttctattgatgaaaatggaatattacaaaatgagaaaagtaccctcta 146  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||    
T  31269463 tgttaggaaacatggcatccatggaaggaaggagagaaaactaagaaactctttctattgatggaaattgaatattacaaaatgagaaaagtaccctcta 31269562  T
Q  147 atggggtggttacaagttatttatactactctctactaggactaatatgctactaatctatatctctaatag 218  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||    
T  31269563 atggggtggttacaagttatttatattactctctactaggactaatatgctact-atctatatatctaatag 31269633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 47 - 195
Target Start/End: Original strand, 36402684 - 36402832
Alignment:
Q  47 tgttaggaaacatggcatccatggaaggaatgagagaaaactaagaaactctttctattgatgaaaatggaatattacaaaatgag--aaaagtaccctc 144  Q
    ||||| ||||||||  |||||||||| ||| |||||||| |||  ||||||||| |||||||| |||| |||||||||||| ||||  |||  ||||| |    
T  36402684 tgttatgaaacatgatatccatggaatgaaggagagaaatctac-aaactctttgtattgatggaaatagaatattacaaa-tgagtgaaagttacccac 36402781  T
Q  145 taatggggtggttacaagttatttatactactctctactaggactaatatg 195  Q
    |||||||||||||||||  |||||||||||   ||||||| ||||||||||    
T  36402782 taatggggtggttacaaactatttatactaaaatctactaagactaatatg 36402832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 110
Target Start/End: Original strand, 36316286 - 36316347
Alignment:
Q  49 ttaggaaacatggcatccatggaaggaatgagagaaaactaagaaactctttctattgatga 110  Q
    ||||||||||||  |||||  ||||||||||||||||||| ||| | | |||||||||||||    
T  36316286 ttaggaaacatgatatccaatgaaggaatgagagaaaactcagacaatatttctattgatga 36316347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 86
Target Start/End: Original strand, 600484 - 600524
Alignment:
Q  46 ctgttaggaaacatggcatccatggaaggaatgagagaaaa 86  Q
    ||||||||||||||| |||||||| |||||| |||||||||    
T  600484 ctgttaggaaacatgacatccatgaaaggaaagagagaaaa 600524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 151; Significance: 5e-80; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 47 - 217
Target Start/End: Original strand, 18705708 - 18705878
Alignment:
Q  47 tgttaggaaacatggcatccatggaaggaatgagagaaaactaagaaactctttctattgatgaaaatggaatattacaaaatgagaaaagtaccctcta 146  Q
    |||||| |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||    
T  18705708 tgttagaaaacatggcatccatgaaaggaaggagagaaaactaagaaactctttctattgatgaaaatagaatattacaaaatgagaaaagttccctcta 18705807  T
Q  147 atggggtggttacaagttatttatactactctctactaggactaatatgctactaatctatatctctaata 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18705808 atggggtggttacaagttatttatactactctctactaggactaatatgctactaatctatatctctaata 18705878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 47 - 217
Target Start/End: Complemental strand, 12436356 - 12436186
Alignment:
Q  47 tgttaggaaacatggcatccatggaaggaatgagagaaaa-ctaagaaactctttctattgatgaaaatggaat-attacaaaatgagaaaagtaccctc 144  Q
    ||||| || ||||| |||||||| |||||||||||||||| ||| |||||| ||  ||||||||| || |  || |||||||| ||||| |  ||||| |    
T  12436356 tgttatgagacatgtcatccatgaaaggaatgagagaaaagctatgaaactattg-tattgatgagaaggatattattacaaa-tgagatagttacccac 12436259  T
Q  145 taatggggtggttacaagttatttatactactctctactaggactaatatgctactaatctatatctctaata 217  Q
    ||||||||||||||| || ||||||||||||| | |||||| |||||||||| ||||||||||||||| ||||    
T  12436258 taatggggtggttactagctatttatactactatttactagaactaatatgccactaatctatatctccaata 12436186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 46 - 86
Target Start/End: Complemental strand, 2427370 - 2427330
Alignment:
Q  46 ctgttaggaaacatggcatccatggaaggaatgagagaaaa 86  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  2427370 ctgttaggaaacatggcatccatggaaggaatgagagaaaa 2427330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 62 - 217
Target Start/End: Complemental strand, 50038685 - 50038529
Alignment:
Q  62 catccatggaaggaatgagagaaaactaagaaactctttctattgatgaaaatggaatattacaaaatgaga-aaagtaccctctaatggggtggttaca 160  Q
    |||||||| |||||| ||||||||| | |   ||||||| |||||||||| || |||  ||||||| ||||  ||||| ||| |||||||||| ||||||    
T  50038685 catccatgaaaggaacgagagaaaagtgaatgactctttgtattgatgaagatagaaagttacaaa-tgagtgaaagttcccactaatggggtagttaca 50038587  T
Q  161 agttatttatactactctctactaggactaatatgctactaatc-tatatctctaata 217  Q
    || ||||| |  |||| |||| |||||||||||| | ||||||| |||||||||||||    
T  50038586 agctatttttggtactatctattaggactaatataccactaatcttatatctctaata 50038529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 209
Target Start/End: Original strand, 35267574 - 35267639
Alignment:
Q  144 ctaatggggtggttacaagttatttatactactctctactaggactaatatgctactaatctatat 209  Q
    |||||||||| |||||||||||||||||||| |  ||||||||| |||| ||  ||| ||||||||    
T  35267574 ctaatggggttgttacaagttatttatactaatgcctactaggattaatgtgtcactcatctatat 35267639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 140; Significance: 2e-73; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 47 - 218
Target Start/End: Complemental strand, 2547158 - 2546987
Alignment:
Q  47 tgttaggaaacatggcatccatggaaggaatgagagaaaactaagaaactctttctattgatgaaaatggaatattacaaaatgagaaaagtaccctcta 146  Q
    |||||||||||||| ||||||||||||||| |||||||| |||| ||||||||| |||||||  |||||||||||||||||||||||||||| |||||||    
T  2547158 tgttaggaaacatgacatccatggaaggaaggagagaaatctaacaaactctttgtattgatagaaatggaatattacaaaatgagaaaagttccctcta 2547059  T
Q  147 atggggtggttacaagttatttatactactctctactaggactaatatgctactaatctatatctctaatag 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2547058 atggggtggttacaagttatttatactactctctactaggactaatatgctactaatctatatctctaatag 2546987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 63 - 217
Target Start/End: Original strand, 20880054 - 20880209
Alignment:
Q  63 atccatggaaggaatgagagaaaactaagaaactctttctattgatgaaaatggaatattacaaaatga-gaaaagta-ccctctaatggggtggttaca 160  Q
    |||||||||||||||||||||||| |||  |||||||| |||| |||| ||| |||  ||||||| ||| ||  |||| ||| |||||||||||||||||    
T  20880054 atccatggaaggaatgagagaaaagtaactaactctttgtattaatgagaatagaaagttacaaa-tgatgagcagtatcccactaatggggtggttaca 20880152  T
Q  161 agttatttatactactctctactaggactaatatgctactaatctatatctctaata 217  Q
    |||||||||||||||| |||||||| ||||||    || ||||||| ||||||||||    
T  20880153 agttatttatactactgtctactagaactaatgaattattaatctacatctctaata 20880209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 46 - 161
Target Start/End: Complemental strand, 5444860 - 5444744
Alignment:
Q  46 ctgttaggaaacatggcatccatggaaggaatgagagaaaa-ctaagaaactctttctattgatgaaaatggaatattacaaaatgagaaaag-taccct 143  Q
    |||||||||||||||||||| |||||| ||| ||| ||||| |||| ||||||||| |||||||  |||||||||||||| |||||| || || |||| |    
T  5444860 ctgttaggaaacatggcatctatggaaagaaggagggaaaaactaacaaactctttgtattgattgaaatggaatattac-aaatgataagagatacctt 5444762  T
Q  144 ctaatggggtggttacaa 161  Q
    |||||| |||||||||||    
T  5444761 ctaatgaggtggttacaa 5444744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 47 - 127
Target Start/End: Complemental strand, 35783859 - 35783779
Alignment:
Q  47 tgttaggaaacatggcatccatggaaggaatgagagaaaactaagaaactctttctattgatgaaaatggaatattacaaa 127  Q
    ||||| |||||||||||||||||||| ||| |||  |||||||| ||||||||| |||||||  |||||||||||||||||    
T  35783859 tgttaagaaacatggcatccatggaaagaaggaggaaaaactaacaaactctttgtattgattgaaatggaatattacaaa 35783779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 47 - 110
Target Start/End: Original strand, 27510483 - 27510546
Alignment:
Q  47 tgttaggaaacatggcatccatggaaggaatgagagaaaactaagaaactctttctattgatga 110  Q
    ||||||||||||||  |||||  ||||||||||||||||||||||| | |||||||||||||||    
T  27510483 tgttaggaaacatgatatccaatgaaggaatgagagaaaactaagagaatctttctattgatga 27510546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 47 - 127
Target Start/End: Original strand, 4167574 - 4167654
Alignment:
Q  47 tgttaggaaacatggcatccatggaaggaatgagagaaaactaagaaactctttctattgatgaaaatggaatattacaaa 127  Q
    ||||| ||||| ||||||| || ||||||||||||||||| | |  |||||||| ||| ||||||||| ||||||||||||    
T  4167574 tgttacgaaacgtggcatcaatagaaggaatgagagaaaagttactaactctttttatcgatgaaaatagaatattacaaa 4167654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 217
Target Start/End: Original strand, 7785283 - 7785451
Alignment:
Q  53 gaaacatggcatccatggaaggaatgagagaaaactaagaaa-ctctttctattgatgaaaatggaatattacaaaatgag--aaaagtaccctctaatg 149  Q
    |||||||  |||||||||||||||||| |||||  |   ||| |||||| |||||||| |||| |||||||||||| ||||  |||  ||||| ||||||    
T  7785283 gaaacattacatccatggaaggaatgaaagaaatatgtcaaagctctttgtattgatggaaattgaatattacaaa-tgagtgaaagttacccactaatg 7785381  T
Q  150 gg--gtggttacaagttatttatactactctctactaggactaatatgctactaatctatatctctaata 217  Q
    ||  ||| |||||| |||||||||||||  ||||||| |||||||| |  ||||| ||||||||| ||||    
T  7785382 ggcggtgattacaaattatttatactacaatctactaagactaatacgaaactaaactatatctccaata 7785451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 7 - 45
Target Start/End: Original strand, 31482161 - 31482199
Alignment:
Q  7 gtgcacccatagaacccgcactctttcgtgcaattgaag 45  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  31482161 gtgcatccatagaacccgcactctttcgtgcaattgaag 31482199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 127
Target Start/End: Original strand, 4174755 - 4174808
Alignment:
Q  74 gaatgagagaaaactaagaaactctttctattgatgaaaatggaatattacaaa 127  Q
    ||||||||||||| | ||||||||||| |||| |||||||| ||||||||||||    
T  4174755 gaatgagagaaaagttagaaactctttgtattaatgaaaatagaatattacaaa 4174808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 217
Target Start/End: Complemental strand, 20880035 - 20879962
Alignment:
Q  144 ctaatggggtggttacaagttatttatactactctctactaggactaatatgctactaatctatatctctaata 217  Q
    |||||| |||||||| ||||||||||||||| | ||||||||  ||||| | | |||||||||||| |||||||    
T  20880035 ctaatgaggtggttataagttatttatactaatgtctactagagctaatgtaccactaatctatatttctaata 20879962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 86
Target Start/End: Complemental strand, 21215058 - 21215019
Alignment:
Q  47 tgttaggaaacatggcatccatggaaggaatgagagaaaa 86  Q
    |||||| ||||||| |||||||||||||||||||||||||    
T  21215058 tgttagtaaacatgacatccatggaaggaatgagagaaaa 21215019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 139; Significance: 7e-73; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 47 - 217
Target Start/End: Original strand, 111544 - 111714
Alignment:
Q  47 tgttaggaaacatggcatccatggaaggaatgagagaaaactaagaaactctttctattgatgaaaatggaatattacaaaatgagaaaagtaccctcta 146  Q
    |||||||||||||||||||||||||||||| ||||||||  ||| ||||||||| |||||||  |||||||||||||||||||||||||||| |||||||    
T  111544 tgttaggaaacatggcatccatggaaggaaggagagaaatttaataaactctttttattgatttaaatggaatattacaaaatgagaaaagttccctcta 111643  T
Q  147 atggggtggttacaagttatttatactactctctactaggactaatatgctactaatctatatctctaata 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  111644 atggggtggttacaagttatttatactactctctactaggactaatatgctactaatctatatctctaata 111714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 81 - 217
Target Start/End: Complemental strand, 4719 - 4583
Alignment:
Q  81 agaaaactaagaaactctttctattgatgaaaatggaatattacaaaatgagaaaagtaccctctaatggggtggttacaagttatttatactactctct 180  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||  |||||| ||||||||| |||||||||||| ||||||||||||||||||    
T  4719 agaaaactaagaaactctttctattgatgaaaatgaaatattacaaaatggaaaaagttccctctaatagggtggttacaaattatttatactactctct 4620  T
Q  181 actaggactaatatgctactaatctatatctctaata 217  Q
    ||||||||||||||||||||||||||||| |||||||    
T  4619 actaggactaatatgctactaatctatatatctaata 4583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0655 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: scaffold0655
Description:

Target: scaffold0655; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 48 - 218
Target Start/End: Complemental strand, 782 - 611
Alignment:
Q  48 gttaggaaacatggcatccatggaaggaatgagagaaaactaagaaa-ctctttctattgatgaaaatggaatattacaaaatgagaaaagt-accctct 145  Q
    ||||||||||||||||||| | ||||||||||||||||| ||  ||| |||||| |||||||| |||| |||||||| ||||||||  |||| |||||||    
T  782 gttaggaaacatggcatccgtcgaaggaatgagagaaaagtagtaaagctctttgtattgatggaaattgaatatta-aaaatgagtgaagtcaccctct 684  T
Q  146 aatggggtggttacaagttatttatactactctctactaggactaatatgctactaatctatatctctaatag 218  Q
    |||||||||| ||||||||||||||||||||||||||||||| |||||||  |||||||||||||||||||||    
T  683 aatggggtggatacaagttatttatactactctctactaggattaatatggcactaatctatatctctaatag 611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 93; Significance: 2e-45; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 47 - 217
Target Start/End: Original strand, 10018777 - 10018948
Alignment:
Q  47 tgttaggaaacatggcatccatggaaggaatgagagaaaactaagaaactctttctattgatgaaaatggaatattacaaaatgag-aaaagt-accctc 144  Q
    |||||||||||||||||||||||||| ||| ||||||||||||| ||||||||| |||||||| ||||| |||||||| |||||||   |||| ||| ||    
T  10018777 tgttaggaaacatggcatccatggaaagaaggagagaaaactaacaaactctttgtattgatggaaatgaaatattac-aaatgagtggaagtaaccatc 10018875  T
Q  145 taatggggtggttacaagttatttatactactctctactaggactaatatgctactaatctatatctctaata 217  Q
    ||||  |||| |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  10018876 taataaggtgattacaagttatttatactactctctactagaactaatatgccactaatctatatctctaata 10018948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 47 - 217
Target Start/End: Original strand, 10256091 - 10256262
Alignment:
Q  47 tgttaggaaacatggcatccatggaaggaatgagagaaaactaagaaactctttctattgatgaaaatggaatattacaaaatgagaa-aagtaccc-tc 144  Q
    |||||||||||||||||||||||||| ||| ||||||||||||| ||||| ||| |||||||| ||||| ||||||||||| ||||   ||||| || ||    
T  10256091 tgttaggaaacatggcatccatggaaagaaggagagaaaactaacaaactttttgtattgatggaaatgaaatattacaaa-tgagtggaagtaaccatc 10256189  T
Q  145 taatggggtggttacaagttatttatactactctctactaggactaatatgctactaatctatatctctaata 217  Q
    ||||  ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  10256190 taataaggtggttacaagttatttatactactctctactagaactaatatgccactaatctatatctctaata 10256262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 47 - 217
Target Start/End: Original strand, 10179974 - 10180145
Alignment:
Q  47 tgttaggaaacatggcatccatggaaggaatgagagaaaactaagaaactctttctattgatgaaaatggaatattacaaaatgaga-aaagta-ccctc 144  Q
    |||||||||||||| |||||||| || ||| ||||||||||||| ||||||||| |||||||| ||||| ||||||||||| ||||  |||||| |||||    
T  10179974 tgttaggaaacatgacatccatgaaaagaaggagagaaaactaacaaactctttgtattgatggaaatgaaatattacaaa-tgagtgaaagtaaccctc 10180072  T
Q  145 taatggggtggttacaagttatttatactactctctactaggactaatatgctactaatctatatctctaata 217  Q
    |||| || || |||||||||||||||| ||||||||||||  |||||||||| ||||||||||||||||||||    
T  10180073 taataggatgattacaagttatttatattactctctactacaactaatatgccactaatctatatctctaata 10180145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 47 - 183
Target Start/End: Original strand, 10123317 - 10123454
Alignment:
Q  47 tgttaggaaacatggcatccatggaaggaatgagagaaaactaagaaactctttctattgatgaaaatggaatattacaaaatgag-aaaagt-accctc 144  Q
    ||||||||||||||||||||||| || ||| ||||||||||||| ||||||||| |||||||| ||||| |||||||| |||||||   |||| ||||||    
T  10123317 tgttaggaaacatggcatccatgaaaagaaggagagaaaactaacaaactctttgtattgatggaaatgaaatattac-aaatgagtggaagtaaccctc 10123415  T
Q  145 taatggggtggttacaagttatttatactactctctact 183  Q
    ||||  |||||||||||||||||||||||||| ||||||    
T  10123416 taataaggtggttacaagttatttatactactttctact 10123454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 47 - 209
Target Start/End: Original strand, 8504202 - 8504365
Alignment:
Q  47 tgttaggaaacatggcatccatggaaggaatgagagaaaactaagaaactctttctattgatgaaaatg-gaatattacaaaatgagaaaagt-accctc 144  Q
    ||||||||| ||||  |||||||||||||||||||||||||| | | |  |||||||||||||| || | |||||| ||||| ||||  || | ||||||    
T  8504202 tgttaggaatcatgaaatccatggaaggaatgagagaaaactcaaataagctttctattgatgataaagtgaatatcacaaa-tgagtgaattgaccctc 8504300  T
Q  145 taatggggtggttacaagttatttatactactctctactaggactaatatgctactaatctatat 209  Q
    ||||  ||| |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  8504301 taatttggttgttacaagttatttatactactctttactaggactaatatgccactaatctatat 8504365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 46 - 127
Target Start/End: Original strand, 782837 - 782918
Alignment:
Q  46 ctgttaggaaacatggcatccatggaaggaatgagagaaaactaagaaactctttctattgatgaaaatggaatattacaaa 127  Q
    ||||||||||||||| ||||||||||||||| |||||||| |||| ||||||||| |||||||  |||||||||||||||||    
T  782837 ctgttaggaaacatgacatccatggaaggaaggagagaaatctaacaaactctttgtattgatagaaatggaatattacaaa 782918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 47 - 217
Target Start/End: Original strand, 19954451 - 19954622
Alignment:
Q  47 tgttaggaaacatggcatccatggaaggaatgagagaaaactaagaaactctttctattgatgaaaatggaatattacaaaatga--gaaaagtaccctc 144  Q
    ||||| |||||||| ||||||||||||||| |||||||| |||| || |||||| |||||||| |||||||||| ||| ||||||  ||||  ||||| |    
T  19954451 tgttatgaaacatgacatccatggaaggaaggagagaaatctaacaatctctttgtattgatggaaatggaataatac-aaatgagtgaaagttacccac 19954549  T
Q  145 taatggggtggttacaagttatttatactactctctactaggactaatatgctactaatctatatctctaata 217  Q
    ||||| ||| |||||||  ||||||||||||  ||||| | ||||| ||||  ||||| ||||||||| ||||    
T  19954550 taatgaggttgttacaaactatttatactacaatctacaaagactattatgaaactaaactatatctccaata 19954622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 47 - 161
Target Start/End: Original strand, 10661756 - 10661871
Alignment:
Q  47 tgttaggaaacatggcatccatggaaggaatgagagaaaactaagaaactctttctattgatgaaaatggaatattacaaaatgag-aaaagta-ccctc 144  Q
    |||||||||||||| ||||||||||| ||||||||||||||||| ||||||||| || |   |||||||||||||||| |||||||  |||||| ||| |    
T  10661756 tgttaggaaacatgacatccatggaaagaatgagagaaaactaacaaactctttgtagtatggaaaatggaatattac-aaatgagtgaaagtatcccac 10661854  T
Q  145 taatggggtggttacaa 161  Q
    |||||||||||||||||    
T  10661855 taatggggtggttacaa 10661871  T

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Target: chr3; HSP #9
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 46 - 161
Target Start/End: Original strand, 10511026 - 10511141
Alignment:
Q  46 ctgttaggaaacatggcatccatggaaggaatgagagaaaactaagaaactctttctattgatgaaaatggaatattacaaaatga-gaaaagta-ccct 143  Q
    ||||||||||||||| |||| |||||| ||||||||||||||||| ||||||||| ||||   |||||||||||||||| |||||| | |||||| |||     
T  10511026 ctgttaggaaacatg-catctatggaaagaatgagagaaaactaacaaactctttgtattatggaaaatggaatattac-aaatgagggaaagtatccca 10511123  T
Q  144 ctaatggggtggttacaa 161  Q
    ||||||||||||||||||    
T  10511124 ctaatggggtggttacaa 10511141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 46 - 161
Target Start/End: Original strand, 10514350 - 10514466
Alignment:
Q  46 ctgttaggaaacatggcatccatggaaggaatgagagaaaactaagaaactctttctattgatgaaaa-tggaatattacaaaatgaga-aaagtaccct 143  Q
    |||||||||| |||||||||||||||| ||| ||||||||||||| ||||||||| |||| ||||||| |||||||||||| | ||||  |||||| |||    
T  10514350 ctgttaggaatcatggcatccatggaaagaaggagagaaaactaataaactctttgtatt-atgaaaaatggaatattacaga-tgagtgaaagtatcct 10514447  T
Q  144 -ctaatggggtggttacaa 161  Q
     ||||||||||||||||||    
T  10514448 actaatggggtggttacaa 10514466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 127
Target Start/End: Original strand, 10613346 - 10613426
Alignment:
Q  47 tgttaggaaacatggcatccatggaaggaatgagagaaaactaagaaactctttctattgatg-aaaatggaatattacaaa 127  Q
    |||| |||| |||| ||||||| ||| ||||||||||||||||| ||||||||| |||| ||| ||||||||||||||||||    
T  10613346 tgttgggaatcatgacatccatagaaagaatgagagaaaactaacaaactctttgtatt-atgcaaaatggaatattacaaa 10613426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 62 - 217
Target Start/End: Complemental strand, 10744885 - 10744728
Alignment:
Q  62 catccatggaaggaatgagagaaaactaagaaa-ctctttctattgatgaaaatggaatattacaaaatgagaaaagtaccctctaatggggtggttaca 160  Q
    ||||||| ||||||||||||||||  ||  ||| |||||| |||||||| |||| |||||||| ||| |    ||| | ||| |||||| ||||||| ||    
T  10744885 catccatagaaggaatgagagaaatgtagtaaagctctttgtattgatggaaattgaatattataaattagtgaaattgcccactaatgaggtggtttca 10744786  T
Q  161 agttatttatactactctctactaggactaatatgctactaatc-tatatctctaata 217  Q
    || ||||||||||||| | || || ||||||||| | ||||||| |||||||||||||    
T  10744785 agctatttatactactatatattaagactaatataccactaatcatatatctctaata 10744728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 84
Target Start/End: Complemental strand, 17743141 - 17743104
Alignment:
Q  47 tgttaggaaacatggcatccatggaaggaatgagagaa 84  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  17743141 tgttaggaaacatggcatccatgaaaggaatgagagaa 17743104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 84
Target Start/End: Complemental strand, 19044461 - 19044424
Alignment:
Q  47 tgttaggaaacatggcatccatggaaggaatgagagaa 84  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  19044461 tgttaggaaacatggcatccatgaaaggaatgagagaa 19044424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 85
Target Start/End: Complemental strand, 548496 - 548458
Alignment:
Q  47 tgttaggaaacatggcatccatggaaggaatgagagaaa 85  Q
    |||||| |||| |||||||||||||||||||||||||||    
T  548496 tgttagaaaacttggcatccatggaaggaatgagagaaa 548458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 47 - 127
Target Start/End: Original strand, 27825693 - 27825774
Alignment:
Q  47 tgttaggaaacatggcatccatggaaggaatgagagaaaactaagaaactctttctattgatga-aaatggaatattacaaa 127  Q
    ||||||||||||||  |||||  ||||||||||||||||||| | | | ||||| ||||||||| |||  ||||||||||||    
T  27825693 tgttaggaaacatgatatccaatgaaggaatgagagaaaactcaaataatctttgtattgatgataaagtgaatattacaaa 27825774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 47 - 136
Target Start/End: Original strand, 144661 - 144750
Alignment:
Q  47 tgttaggaaacatggcatccatggaaggaatgagagaaaactaagaaactctttctattgatgaaaatggaatattacaaaatgagaaaa 136  Q
    ||||||||||||||||||| |||||||||| |||| ||| |||| ||||||||| |||||||  ||||||||||||||||||||||||||    
T  144661 tgttaggaaacatggcatctatggaaggaaggagataaatctaacaaactctttatattgatagaaatggaatattacaaaatgagaaaa 144750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 47 - 136
Target Start/End: Original strand, 146720 - 146809
Alignment:
Q  47 tgttaggaaacatggcatccatggaaggaatgagagaaaactaagaaactctttctattgatgaaaatggaatattacaaaatgagaaaa 136  Q
    ||||||||||||||||||| || ||||||| |||| ||| |||| ||||||||| |||||||  ||||||||||||||||||||||||||    
T  146720 tgttaggaaacatggcatctatagaaggaaggagataaatctaacaaactctttatattgatagaaatggaatattacaaaatgagaaaa 146809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0959 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0959
Description:

Target: scaffold0959; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 47 - 97
Target Start/End: Original strand, 408 - 458
Alignment:
Q  47 tgttaggaaacatggcatccatggaaggaatgagagaaaactaagaaactc 97  Q
    |||||||||||| |||||||||||||||||||||||||| |||| ||||||    
T  408 tgttaggaaacaaggcatccatggaaggaatgagagaaatctaacaaactc 458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0263 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 176
Target Start/End: Complemental strand, 23049 - 22919
Alignment:
Q  46 ctgttaggaaacatggcatccatggaaggaatgagagaaaactaagaaactctttctattgatga--aaatggaatattacaaaatgagaaaag-taccc 142  Q
    |||||||||||||||  |||||  ||||||||||||||||||| | | | | |||||||||||||  |||  |||||||||||  ||| || || ||||     
T  23049 ctgttaggaaacatgatatccaatgaaggaatgagagaaaactcaaataatatttctattgatgataaaagtgaatattacaa--tgataagagctacct 22952  T
Q  143 tctaatggggtggttacaagttatttatactact 176  Q
    ||||||| |||||||||||| ||| |||||||||    
T  22951 tctaatgaggtggttacaag-tatatatactact 22919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 161
Target Start/End: Complemental strand, 183102 - 182992
Alignment:
Q  53 gaaacatggcatccatggaaggaatgagagaaaact-aagaaactctttctattgatg--aaaatggaatattacaaaatgagaaaagtaccctctaatg 149  Q
    ||||||||||||||||| ||| |||||||||||||| ||| || ||||||| ||||||  ||||  ||||||||||||   ||  ||||||| |||||||    
T  183102 gaaacatggcatccatgaaagaaatgagagaaaactcaagtaa-tctttcttttgatgataaaagtgaatattacaaatgaagtgaagtaccttctaatg 183004  T
Q  150 gggtggttacaa 161  Q
     ||||| |||||    
T  183003 aggtggctacaa 182992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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