View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5284_low_4 (Length: 605)
Name: NF5284_low_4
Description: NF5284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5284_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 372; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 76 - 506
Target Start/End: Original strand, 43187860 - 43188280
Alignment:
| Q |
76 |
ttctgctatttgagtagtttaattgcggtttgagtggtttaaaacaattcaaccatgatccagagatattcttggttcaatgttcagtctttaaaacact |
175 |
Q |
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| T |
43187860 |
ttctgttatttgattagtttaattgcggtttgagtgatttaaaacaattcaaccatgatccagagatattcttggttcaatgttcagtctttaaaacact |
43187959 |
T |
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| Q |
176 |
gcaattaattgaattcatattgtgacctccactgatatctttcaattcatgaagaaaaatggaatggaatacaatgagacgaaatttgagaggatttgat |
275 |
Q |
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| T |
43187960 |
gcaattaattgaattcatattgtgacctccactgatatctttcagttcatgaagaaaaatggaatggaatacaatgagacgaaatttgagaggatttgat |
43188059 |
T |
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| Q |
276 |
tgtcgaaggtctgtttttctcaacatcatcgttgttacaactagaaagcatttagtgactcttactgagctacttgtcttatatctcggtgctcaactgc |
375 |
Q |
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| T |
43188060 |
tgtcgaaggtctgtttttctcaacatcatcgttgttacaactagaaagcatttagtgactcttattgagctacttgtcttatatctcggtgctcaactgc |
43188159 |
T |
|
| Q |
376 |
tggattttgtgtattttttggtgattctttcatcagttagcgttcaataaaacatgttagcatcatttgttcctatttggaatccggatggatataggga |
475 |
Q |
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| T |
43188160 |
tgga----------tttttggtgattctttcatcagttggcgttcaataaaacatgttagcatcatttgttcctatttggaatccggatggatataggga |
43188249 |
T |
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| Q |
476 |
tctagcttccattccaccacttctgaaatcc |
506 |
Q |
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| T |
43188250 |
tctagcttccattccaccacttctgaaatcc |
43188280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 12 - 76
Target Start/End: Original strand, 43187185 - 43187248
Alignment:
| Q |
12 |
agagaagggaatcaagtgtgtttttgattgagtttgaattctcatgactgtgtaaatctgtgttt |
76 |
Q |
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| T |
43187185 |
agagaagggaatcaagtgtgtttttgattgagtttgaattctcatgactgtgt-aatctgtgttt |
43187248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 552 - 605
Target Start/End: Original strand, 43188281 - 43188334
Alignment:
| Q |
552 |
caccagcactcctttactgttatagtcggtctttgtgtcacatcacggccaacc |
605 |
Q |
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| T |
43188281 |
caccagcactcctttactgtgatagtcggtctttgtgtcacatcacggccaacc |
43188334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 157 - 200
Target Start/End: Original strand, 22710090 - 22710133
Alignment:
| Q |
157 |
gttcagtctttaaaacactgcaattaattgaattcatattgtga |
200 |
Q |
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| T |
22710090 |
gttcagtctttaaaacactgcaattaattgaagtcatattgtga |
22710133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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