View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5284_low_5 (Length: 549)
Name: NF5284_low_5
Description: NF5284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5284_low_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 144; Significance: 2e-75; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 20 - 205
Target Start/End: Original strand, 8173150 - 8173341
Alignment:
| Q |
20 |
ttgaggctcatgatgccataacaaa-----caaatagaagtgtgagaatagattgagaaaaaatatttgaacaatgagcgacaatattttgatttctcat |
114 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |
|
|
| T |
8173150 |
ttgaggctcatgatgccataacaaattaaacaaatagaagtgtgagaatagattgagaaaaaatatttgaacgatgagcgataatattttgatttctcat |
8173249 |
T |
|
| Q |
115 |
ctaagtgatatgtggcatcatatatgtatttaaagtgatta-tttatagattatgcttatttgaacaacgcacatgagaagttgaccattaa |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | ||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8173250 |
ctaagtgatatgtggcatcatatatgtatttaaaggggttattttttagattatgcttatttgaacaacgcacatgagaagttgaccattaa |
8173341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 204 - 364
Target Start/End: Original strand, 8174717 - 8174878
Alignment:
| Q |
204 |
aaataagcaaagcacttaacaaaattcactcctaactagacaacttttctataatcattgttcgcaacaagcaagaacaactcagtttcaataagtctag |
303 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8174717 |
aaataagcaaagcacttaacaaaattcactcctaaatagacaacttttctataatcattgttcgcaacaagcaagaacaactcagtttcaataagtctag |
8174816 |
T |
|
| Q |
304 |
gcttgttaaccttgatccatcaactttgtaagagtcatccaagccaa-tcatccataattga |
364 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||| | |||||||||||| |
|
|
| T |
8174817 |
gcttgttaaccttgatccatcaactttgcaagagtcatccaagccaatttatccataattga |
8174878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 373 - 508
Target Start/End: Original strand, 8176040 - 8176176
Alignment:
| Q |
373 |
gtcaaaacccaccggaaggtcgcaaaaagtctcacgggaagctttattcaacggtagcacaaggaagtatttatcttttaacaatggcagaga-ttagag |
471 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
8176040 |
gtcaaaacccaccggtaggtcgcaaaaagtctcacgggaagctttattcaacggtagcacaaggaagtatttatcttttaacaatggcagagagttagag |
8176139 |
T |
|
| Q |
472 |
ttaacttcaaagaaattcttgtcttgccttaaagaca |
508 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8176140 |
ttaacttcaaagaaattcttgtcttgccttaaagaca |
8176176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 147 - 205
Target Start/End: Complemental strand, 48775334 - 48775276
Alignment:
| Q |
147 |
aagtgattatttatagattatgcttatttgaacaacgcacatgagaagttgaccattaa |
205 |
Q |
| |
|
|||||||||||| |||||| ||||||| ||||||| || | ||||||||||||||||| |
|
|
| T |
48775334 |
aagtgattatttttagattcagcttattcgaacaacacaaacgagaagttgaccattaa |
48775276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 146 - 198
Target Start/End: Complemental strand, 30534595 - 30534543
Alignment:
| Q |
146 |
aaagtgattatttatagattatgcttatttgaacaacgcacatgagaagttga |
198 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| |||||| |||||||||||| |
|
|
| T |
30534595 |
aaagtgattatttttagattatgcttatttgaataacgcaaatgagaagttga |
30534543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University