View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5284_low_6 (Length: 507)
Name: NF5284_low_6
Description: NF5284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5284_low_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 19 - 497
Target Start/End: Complemental strand, 54702248 - 54701770
Alignment:
| Q |
19 |
tttatgaacttgtctgccatgaccatattaatgtatcaacttggcaactattttgttagttctaaccactgactcattcataggggaaaactaccttgat |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
54702248 |
tttatgaacttgtctgccatgaccatattaatgtatcaacttggcaactattttgttagttctaaccactgactcattcataggggaaa-ctaccttgat |
54702150 |
T |
|
| Q |
119 |
ctaaatggtaataaagatgacatttattccnnnnnnnn-tatacaagatttttaatgtgttgaccacaagattttctttgagaccacaagagtgttgacc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54702149 |
ctaaatggtaataaagatgacatttattccaaaaaaaaatatacaagatttttaatgtgttgaccacaagattttctttgagaccacaagagtgttgacc |
54702050 |
T |
|
| Q |
218 |
acttgctctgctttaatcaaccacaaagactctaatgagttaactgtgaaatcttcggcttctttcaagatcgaaaaagtttccatgtctttgtttgcgg |
317 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54702049 |
acttgctctgctttaatcaaccacacagactctaatgagttaactgtgacatcttgggcttctttcaagatcgaaaaagtttccatgtctttgtttgcgg |
54701950 |
T |
|
| Q |
318 |
aagaaaagaaactgtggactcatttttcattgctttcaagtttccaagtgcctttgcaatagctttcttcatcttcttcctatatgacaagtattttcct |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54701949 |
aagaaaagaaactgtggactcatttttcattgctttcaagtttccaagtgcctctgcaatagctttcttcatcttcttcctatatgacaagtattttcct |
54701850 |
T |
|
| Q |
418 |
tccaccctcaactgtgattccactttccacagctctcctcctgagaataactgaccgtagttcatgcatgatatcctttg |
497 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
54701849 |
tccaccctcaactgtgattccactttccacagctctcctcctgagaataactgaccttagttcatgcatgatatcctttg |
54701770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University