View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5284_low_9 (Length: 469)
Name: NF5284_low_9
Description: NF5284
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5284_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 169; Significance: 2e-90; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 277 - 461
Target Start/End: Original strand, 41183321 - 41183505
Alignment:
| Q |
277 |
acctgtaatttatgattttttagtaaaggatgatcaaaagctggttgtttgtgaatatcaacacaatcaactatataccctgactttgtctatagaaacc |
376 |
Q |
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| T |
41183321 |
acctgtaacttatgattttttagtaaaagatgatcaaaagctggttgtttgtgaatatcaacacaatcaactatataccctgactttgtctatagaaacc |
41183420 |
T |
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| Q |
377 |
acaaaaaatattaaaaagggtgatgaaattaattaaaacacgaataaaacaactgtatgtgtaaatttatacctggatattcttg |
461 |
Q |
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| T |
41183421 |
acaaaaattattaaaaagggtgatgaaattaattaaaacacgaataaaacaactgtatgtgtaaatttatacctggatactcttg |
41183505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 18 - 191
Target Start/End: Original strand, 41183062 - 41183235
Alignment:
| Q |
18 |
ctatgttcattgaataaagattttcctcgaataagatcatctttgattatcctccgaatagggacagttccttttggacatctaaccttctcaaacccgt |
117 |
Q |
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| T |
41183062 |
ctatgttcattgaataaagattttcctcgaatgagatcatctttgattatcctccgaatagggacagttccttttggacatctaaccttctcaaacccgt |
41183161 |
T |
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| Q |
118 |
atatatatttagttggtgaagtcgctgcacttgtttcattaatttttctttcaaaagttggttttctctacaac |
191 |
Q |
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| T |
41183162 |
atgcatgtttagttggtgaagtcgctgcacttgtttcattaatttttctttcaaaagttggttttctctacaac |
41183235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 277 - 383
Target Start/End: Original strand, 40297497 - 40297603
Alignment:
| Q |
277 |
acctgtaatttatgattttttagtaaaggatgatcaaaagctggttgtttgtgaatatcaacacaatcaactatataccctgactttgtctatagaaacc |
376 |
Q |
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| T |
40297497 |
acctgtaatttatgattctttaataaaggatggtcgaaagctgcctgcttgtcaatatcaatgcaatcaactatgtatccgaattttgtctattaaaacc |
40297596 |
T |
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| Q |
377 |
acaaaaa |
383 |
Q |
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|| |||| |
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| T |
40297597 |
accaaaa |
40297603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 275 - 383
Target Start/End: Complemental strand, 50198976 - 50198868
Alignment:
| Q |
275 |
ttacctgtaatttatgattttttagtaaaggatgatcaaaagctggttgtttgtgaatatcaacacaatcaactatataccctgactttgtctatagaaa |
374 |
Q |
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||||||| || ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| | | || || |||||||||||||| || |
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| T |
50198976 |
ttacctgcaacttatgattttttaataaaggatgatcaaaagctggttgtttgtaaatatcaacacaatcaattgtgtatccagactttgtctatagtaa |
50198877 |
T |
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| Q |
375 |
ccacaaaaa |
383 |
Q |
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|||| |||| |
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| T |
50198876 |
ccaccaaaa |
50198868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 286 - 350
Target Start/End: Original strand, 26005252 - 26005316
Alignment:
| Q |
286 |
ttatgattttttagtaaaggatgatcaaaagctggttgtttgtgaatatcaacacaatcaactat |
350 |
Q |
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| T |
26005252 |
ttatgattctttaataaaggatgatcaaaagccaattgtttgtgaatgtcaatacaatcaactat |
26005316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 277 - 347
Target Start/End: Complemental strand, 15228913 - 15228843
Alignment:
| Q |
277 |
acctgtaatttatgattttttagtaaaggatgatcaaaagctggttgtttgtgaatatcaacacaatcaac |
347 |
Q |
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| T |
15228913 |
acctgtatcttatgattctttagtaaaggatggtcaaaagctagttgcttattaatatcaatacaatcaac |
15228843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 277 - 344
Target Start/End: Complemental strand, 15246944 - 15246877
Alignment:
| Q |
277 |
acctgtaatttatgattttttagtaaaggatgatcaaaagctggttgtttgtgaatatcaacacaatc |
344 |
Q |
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||||||| |||||||| |||||||||||||||||||||||| ||| || | |||||||| |||||| |
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| T |
15246944 |
acctgtatcttatgattctttagtaaaggatgatcaaaagctaattgcttattaatatcaatacaatc |
15246877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 294 - 330
Target Start/End: Original strand, 30919856 - 30919892
Alignment:
| Q |
294 |
ttttagtaaaggatgatcaaaagctggttgtttgtga |
330 |
Q |
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| T |
30919856 |
ttttaataaaggatgatcaaaagctggttgtttgtga |
30919892 |
T |
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