View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5285-Insertion-1 (Length: 383)
Name: NF5285-Insertion-1
Description: NF5285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5285-Insertion-1 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 7 - 383
Target Start/End: Complemental strand, 49916215 - 49915839
Alignment:
| Q |
7 |
aaattaaagaaacagagatattaagcattgaagtaaagccaggatggaagaaaggaacaaagataacattcccagataaagggaatcagctaataaacca |
106 |
Q |
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| T |
49916215 |
aaattaaagaaacagagatattaagcattgaagtaaagccaggatggaagaaaggaacaaagataacattcccagataaagggaatcaactaataaacca |
49916116 |
T |
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| Q |
107 |
acttccagcagatcttgtatttgtgattgatgagatgcctcatgaattgttcaagagagatgggaatgaccttattgtgaatcaaaagatatcactagca |
206 |
Q |
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| T |
49916115 |
acttccagcagatcttgtatttgtgattgatgagaagcctcatgaattgttcaagagagatgggaatgaccttattgtgaatcaaaagatatcactagca |
49916016 |
T |
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| Q |
207 |
gaagctattggtggaacttcagtaaatatcaaaacactttacaaacgtagtttaagtgtcccagtgaaaaacattgtgagtcctggttatgagcttgttg |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49916015 |
gaagctattggtggaacttcagtaaatatcaaaacactttacaaacgtagtttaagtgtcccagtgaaaaacattgtgagtcctggttatgagcttgttg |
49915916 |
T |
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| Q |
307 |
ttgcaaatgaaggaatgccaataacaaaggaacccggtcataggggtgatttgaggatcatatttgaggttaagttc |
383 |
Q |
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| T |
49915915 |
ttgcaaatgaaggaatgccaataacaaaggaacccggtcataggggtgatttgaggatcatatttgaggttaagttc |
49915839 |
T |
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