View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5285-Insertion-3 (Length: 179)

Name: NF5285-Insertion-3
Description: NF5285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5285-Insertion-3
NF5285-Insertion-3
[»] chr2 (2 HSPs)
chr2 (114-179)||(41231826-41231891)
chr2 (13-63)||(44940403-44940453)
[»] chr7 (2 HSPs)
chr7 (13-59)||(4164212-4164258)
chr7 (13-59)||(34206503-34206549)
[»] chr4 (2 HSPs)
chr4 (13-59)||(38947798-38947844)
chr4 (13-59)||(53679034-53679080)
[»] chr3 (3 HSPs)
chr3 (13-59)||(16896496-16896542)
chr3 (21-59)||(11584243-11584281)
chr3 (13-59)||(19233238-19233284)
[»] chr6 (2 HSPs)
chr6 (13-59)||(1308588-1308634)
chr6 (16-59)||(26711408-26711451)
[»] chr8 (1 HSPs)
chr8 (13-59)||(41691681-41691727)


Alignment Details
Target: chr2 (Bit Score: 62; Significance: 5e-27; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 114 - 179
Target Start/End: Original strand, 41231826 - 41231891
Alignment:
Q  114 atttgcatagttacatgcctggtaatttcagctagattcttcaataatctacaacatagacgggtc 179  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41231826 attttcatagttacatgcctggtaatttcagctagattcttcaataatctacaacatagacgggtc 41231891  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 63
Target Start/End: Original strand, 44940403 - 44940453
Alignment:
Q  13 caccaatattgggccgccaaagccaaacatctcattcagtatcctgcggga 63  Q
    ||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  44940403 caccaatgttgggccgccaaagccaaacatctgattcagtatcctgcggga 44940453  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 4164212 - 4164258
Alignment:
Q  13 caccaatattgggccgccaaagccaaacatctcattcagtatcctgc 59  Q
    ||||||| |||||||||||||||||||||||| ||||||||||||||    
T  4164212 caccaatgttgggccgccaaagccaaacatctgattcagtatcctgc 4164258  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 34206503 - 34206549
Alignment:
Q  13 caccaatattgggccgccaaagccaaacatctcattcagtatcctgc 59  Q
    ||||||| |||||||||||||||||||||||| ||||||||||||||    
T  34206503 caccaatgttgggccgccaaagccaaacatctgattcagtatcctgc 34206549  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 38947844 - 38947798
Alignment:
Q  13 caccaatattgggccgccaaagccaaacatctcattcagtatcctgc 59  Q
    ||||||| |||||||||||||||||||||||| ||||||||||||||    
T  38947844 caccaatgttgggccgccaaagccaaacatctgattcagtatcctgc 38947798  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 53679080 - 53679034
Alignment:
Q  13 caccaatattgggccgccaaagccaaacatctcattcagtatcctgc 59  Q
    ||||||| ||||||||||||||||| |||||| ||||||||||||||    
T  53679080 caccaatgttgggccgccaaagccagacatctgattcagtatcctgc 53679034  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 16896542 - 16896496
Alignment:
Q  13 caccaatattgggccgccaaagccaaacatctcattcagtatcctgc 59  Q
    ||||||| |||||||||||||||||||||||| ||||||||||||||    
T  16896542 caccaatgttgggccgccaaagccaaacatctgattcagtatcctgc 16896496  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 21 - 59
Target Start/End: Original strand, 11584243 - 11584281
Alignment:
Q  21 ttgggccgccaaagccaaacatctcattcagtatcctgc 59  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  11584243 ttgggccgccaaagccaaacatctaattcagtatcctgc 11584281  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 19233238 - 19233284
Alignment:
Q  13 caccaatattgggccgccaaagccaaacatctcattcagtatcctgc 59  Q
    ||||||| ||||||||||||||||| |||||| ||||||||||||||    
T  19233238 caccaatgttgggccgccaaagccagacatctgattcagtatcctgc 19233284  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000006
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 1308634 - 1308588
Alignment:
Q  13 caccaatattgggccgccaaagccaaacatctcattcagtatcctgc 59  Q
    ||||||| |||||||||||||| ||||||||| ||||||||||||||    
T  1308634 caccaatgttgggccgccaaagtcaaacatctgattcagtatcctgc 1308588  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 16 - 59
Target Start/End: Original strand, 26711408 - 26711451
Alignment:
Q  16 caatattgggccgccaaagccaaacatctcattcagtatcctgc 59  Q
    |||| ||||||||||||||||| |||||| ||||||||||||||    
T  26711408 caatgttgggccgccaaagccagacatctaattcagtatcctgc 26711451  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 41691727 - 41691681
Alignment:
Q  13 caccaatattgggccgccaaagccaaacatctcattcagtatcctgc 59  Q
    |||||||||| || |||||||||||||||||| ||| ||||||||||    
T  41691727 caccaatattaggtcgccaaagccaaacatctgattgagtatcctgc 41691681  T

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