View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5285_high_13 (Length: 256)

Name: NF5285_high_13
Description: NF5285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5285_high_13
NF5285_high_13
[»] chr6 (1 HSPs)
chr6 (8-240)||(13535116-13535348)
[»] scaffold0531 (1 HSPs)
scaffold0531 (25-240)||(10307-10522)
[»] chr4 (4 HSPs)
chr4 (29-240)||(16593626-16593837)
chr4 (25-240)||(19852532-19852747)
chr4 (25-94)||(24239846-24239915)
chr4 (62-127)||(16832110-16832175)
[»] chr3 (3 HSPs)
chr3 (33-221)||(31067232-31067420)
chr3 (29-117)||(29346850-29346938)
chr3 (165-217)||(26796671-26796723)
[»] chr8 (2 HSPs)
chr8 (25-181)||(8831139-8831294)
chr8 (166-214)||(3072396-3072444)
[»] chr2 (3 HSPs)
chr2 (172-221)||(13502779-13502828)
chr2 (25-107)||(14296248-14296330)
chr2 (25-106)||(31092364-31092445)


Alignment Details
Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 8 - 240
Target Start/End: Original strand, 13535116 - 13535348
Alignment:
Q  8 atcaatggaaaagacatactcagccggaatgaggacccttgcccaaaggagtaactccacagctgtcttggcagttacataatagtttgttcatttgcaa 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||| ||||||||||||    
T  13535116 atcaatggaaaagacatactcagccggaatgaggacccttgcccaaaggattaactccaaagctgtcttggcagctacataatagttggttcatttgcaa 13535215  T
Q  108 aagtatagataggaatatcactattttgtactaaatttcttagagcatgtagtcttgtaatctgcttagcttttatgtattatggtggacttaaccacct 207  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||    
T  13535216 aagtatagatagaaatatcactattttgtactaaatttcttagagcatgtagtcttgtaatctgcttagcttttctgtattatggtggacttaagcacct 13535315  T
Q  208 ctttccttaggatcctttcctttacggggatag 240  Q
    |||||||||||||||||||||||||||||||||    
T  13535316 ctttccttaggatcctttcctttacggggatag 13535348  T

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Target: scaffold0531 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: scaffold0531
Description:

Target: scaffold0531; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 25 - 240
Target Start/End: Original strand, 10307 - 10522
Alignment:
Q  25 actcagccggaatgaggacccttgcccaaaggagtaactccacagctgtcttggcagttacataatagtttgttcatttgcaaaagtatagataggaata 124  Q
    ||||||||||||||||||||| |||| ||| ||||||||||| |||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||    
T  10307 actcagccggaatgaggacccgtgcctaaaagagtaactccaaagctgtcttggcagctacataatagttggttcatttgcaaaagcatagataggaata 10406  T
Q  125 tcactattttgtactaaatttcttagagcatgtagtcttgtaatctgcttagcttttatgtattatggtggacttaaccacctctttccttaggatcctt 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||    
T  10407 tcactattttgtactaaatttcttagagcatgtagtcttgtaatctgcttagcttttctgtattatggtggacttagccacctctttccttaggatcctt 10506  T
Q  225 tcctttacggggatag 240  Q
    |||||||  |||||||    
T  10507 tcctttatagggatag 10522  T

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Target: chr4 (Bit Score: 140; Significance: 2e-73; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 29 - 240
Target Start/End: Complemental strand, 16593837 - 16593626
Alignment:
Q  29 agccggaatgaggacccttgcccaaaggagtaactccacagctgtcttggcagttacataatagtttgttcatttgcaaaagtatagataggaatatcac 128  Q
    |||||||||||| |||| |||||||| ||||||| ||| || ||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||    
T  16593837 agccggaatgagaacccgtgcccaaaagagtaacgccaaagttgtcttggcagctacataatagttggttcatttgcaaaagcatagataggaatatcac 16593738  T
Q  129 tattttgtactaaatttcttagagcatgtagtcttgtaatctgcttagcttttatgtattatggtggacttaaccacctctttccttaggatcctttcct 228  Q
    | ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||  ||||||||| |||||||||| |||||    
T  16593737 tgttttgtactaaatttcttagagcgtgtagtcttgtaatctgcttagcttttctgtattatggtggacttagtcacctcttttcttaggatcccttcct 16593638  T
Q  229 ttacggggatag 240  Q
    |||  |||||||    
T  16593637 ttatagggatag 16593626  T

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Target: chr4; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 25 - 240
Target Start/End: Original strand, 19852532 - 19852747
Alignment:
Q  25 actcagccggaatgaggacccttgcccaaaggagtaactccacagctgtcttggcagttacataatagtttgttcatttgcaaaagtatagataggaata 124  Q
    ||||| |||||||||| |||| |||||||| ||||||||||| || ||||||||||| | |||||||||| ||||||||||||||| |||||||||||||    
T  19852532 actcacccggaatgagaacccgtgcccaaaagagtaactccaaagttgtcttggcagcttcataatagttggttcatttgcaaaagcatagataggaata 19852631  T
Q  125 tcactattttgtactaaatttcttagagcatgtagtcttgtaatctgcttagcttttatgtattatggtggacttaaccacctctttccttaggatcctt 224  Q
    ||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||  |||||||||||||||||||| |    
T  19852632 tcattgttttgtactaaatttcttagagcgtgtagtcttgtaatctgcttagcttttctgtattatggtgtacttagtcacctctttccttaggatccct 19852731  T
Q  225 tcctttacggggatag 240  Q
    |||||||  |||||||    
T  19852732 tcctttatagggatag 19852747  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 94
Target Start/End: Complemental strand, 24239915 - 24239846
Alignment:
Q  25 actcagccggaatgaggacccttgcccaaaggagtaactccacagctgtcttggcagttacataatagtt 94  Q
    ||||||||||||||||||||| |||||||| | ||| ||| | |||| ||||||||| ||||||||||||    
T  24239915 actcagccggaatgaggacccgtgcccaaaagggtacctcaaaagctatcttggcagatacataatagtt 24239846  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 62 - 127
Target Start/End: Complemental strand, 16832175 - 16832110
Alignment:
Q  62 ctccacagctgtcttggcagttacataatagtttgttcatttgcaaaagtatagataggaatatca 127  Q
    ||||| |||||||||||||| |||||||||||  |||||||||||  || |||| |||||||||||    
T  16832175 ctccaaagctgtcttggcagatacataatagtcggttcatttgcatcagaatagctaggaatatca 16832110  T

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Target: chr3 (Bit Score: 105; Significance: 2e-52; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 33 - 221
Target Start/End: Original strand, 31067232 - 31067420
Alignment:
Q  33 ggaatgaggacccttgcccaaaggagtaactccacagctgtcttggcagttacataatagtttgttcatttgcaaaagtatagataggaatatcactatt 132  Q
    ||||||||||||| |||| ||| | |||||||||   |||||||||||| |||| ||||||| || |||||||||||| |||||||||||||||||||||    
T  31067232 ggaatgaggacccgtgcctaaaagtgtaactccaatcctgtcttggcagctacaaaatagttggtacatttgcaaaagcatagataggaatatcactatt 31067331  T
Q  133 ttgtactaaatttcttagagcatgtagtcttgtaatctgcttagcttttatgtattatggtggacttaaccacctctttccttaggatc 221  Q
    ||||| ||||||||||||||   ||||||||||||||   ||||||||| |||||||||||||||||| ||||||||||||||||||||    
T  31067332 ttgtattaaatttcttagagagggtagtcttgtaatcactttagcttttctgtattatggtggacttagccacctctttccttaggatc 31067420  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 29 - 117
Target Start/End: Original strand, 29346850 - 29346938
Alignment:
Q  29 agccggaatgaggacccttgcccaaaggagtaactccacagctgtcttggcagttacataatagtttgttcatttgcaaaagtatagat 117  Q
    ||||||||||||||||| ||| |||| ||||| ||||| ||| | |||| ||| |||||||||||| || || |||||| |||||||||    
T  29346850 agccggaatgaggacccgtgcacaaaagagtacctccaaagccgccttgacagatacataatagttggtccaattgcaagagtatagat 29346938  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 217
Target Start/End: Complemental strand, 26796723 - 26796671
Alignment:
Q  165 taatctgcttagcttttatgtattatggtggacttaaccacctctttccttag 217  Q
    |||| ||| |||||||| | ||| |||||||||||||| ||||||||||||||    
T  26796723 taatttgcctagcttttctctataatggtggacttaacaacctctttccttag 26796671  T

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Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 25 - 181
Target Start/End: Complemental strand, 8831294 - 8831139
Alignment:
Q  25 actcagccggaatgaggacccttgcccaaaggagtaactccacagctgtcttggcagttacataatagtttgttcatttgcaaaagtatagataggaata 124  Q
    ||||||||||||||||||||| ||| |||| | ||||||||| || ||||| | ||| |||  ||||||| ||||||||||||||  ||| |||||||||    
T  8831294 actcagccggaatgaggacccgtgctcaaaagtgtaactccaaagttgtctcgacagctactgaatagttagttcatttgcaaaacaatatataggaata 8831195  T
Q  125 --tcacta-ttttgtactaaatttcttagagcatgtagtcttgtaatctgcttagctttt 181  Q
      |||||| ||||||| |||||||||| ||    | ||||||||||||||||||||||||    
T  8831194 tctcactacttttgtattaaatttctttga----gaagtcttgtaatctgcttagctttt 8831139  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 166 - 214
Target Start/End: Complemental strand, 3072444 - 3072396
Alignment:
Q  166 aatctgcttagcttttatgtattatggtggacttaaccacctctttcct 214  Q
    |||||| ||||||||| |||||||||||||||||| |||||||||||||    
T  3072444 aatctgtttagcttttctgtattatggtggacttagccacctctttcct 3072396  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 221
Target Start/End: Original strand, 13502779 - 13502828
Alignment:
Q  172 cttagcttttatgtattatggtggacttaaccacctctttccttaggatc 221  Q
    |||||||||| |||||||||||||| ||| ||||||| ||||||||||||    
T  13502779 cttagcttttctgtattatggtggaattagccacctccttccttaggatc 13502828  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 107
Target Start/End: Complemental strand, 14296330 - 14296248
Alignment:
Q  25 actcagccggaatgaggacccttgcccaaaggagtaactccacagctgtcttggcagttacataatagtttgttcatttgcaa 107  Q
    |||||||||||||||| || | || ||||| | ||| ||||| || || |||||||| |||||||||||| ||||| ||||||    
T  14296330 actcagccggaatgagcactcgtgtccaaaagggtacctccaaagatgccttggcagatacataatagttggttcaattgcaa 14296248  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 106
Target Start/End: Original strand, 31092364 - 31092445
Alignment:
Q  25 actcagccggaatgaggacccttgcccaaaggagtaactccacagctgtcttggcagttacataatagtttgttcatttgca 106  Q
    ||||||||||||||||||| | |||||||| | ||| ||||| ||  |||||| ||| |||| ||||||| || ||||||||    
T  31092364 actcagccggaatgaggactcgtgcccaaaagggtacctccaaagtcgtcttgccagatacagaatagttggtccatttgca 31092445  T

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