View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5285_high_2 (Length: 798)
Name: NF5285_high_2
Description: NF5285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5285_high_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 576; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 576; E-Value: 0
Query Start/End: Original strand, 17 - 789
Target Start/End: Complemental strand, 34795687 - 34794902
Alignment:
| Q |
17 |
aagaataacttgcttcatctgctatttacatctgggtgtgttttctacttcctcttcaaaccacgtcattgtgtgctttccaagcaaggaattcaactta |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
34795687 |
aagaataacttgcttcatctgctatttacatctgggtgtgttttctacttcctcttcaaaccacgtaattgtgtgctttccaagcaaggaattcaactta |
34795588 |
T |
|
| Q |
117 |
agggtgcttgtgctttgggtcttgggctcacttcacttgccttctccaagaagcttcacctattcatttggccttgaagatccatgtcttagcttatagt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34795587 |
agggtgcttgtgctttgggtcttgggctcacttcacttgccttctccaagaagcttcacctattcatttggccttgaagatccatgtcttagcttatagt |
34795488 |
T |
|
| Q |
217 |
ctcttagaaaaattgc-aagatctaatttagtccctcataaaagat-----------agaaaatgaaaataagatccacattttgtagtcttcctacctt |
304 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34795487 |
ctcttagaaaaattgctaagatctaatttagcccctcataaaagatagaaagagaaaagaaagtgaaaataagatccacattttgtagtcttcctacctt |
34795388 |
T |
|
| Q |
305 |
ctttattttttgtttggttgagggaggaaagatattaaagatagaaagagaaaagaaagtgagtcagaaaataagattattgtttactagtttgatatta |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |
|
|
| T |
34795387 |
ctttattttttgtttggttgagggaggaaagatattaaagatagaaagagaaaagaaagtgagtgagaaaataagattattgtttagtagtttgatatta |
34795288 |
T |
|
| Q |
405 |
gnnnnnnnnnnnnnntacaccagtgactcctaaggnnnnnnnaaatgacactgacatctcctctattttgtcacatgacacaaacctctcatgttgttag |
504 |
Q |
| |
|
| |||| | ||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
34795287 |
gaaaaaaaggaaaaatacatcggtgactcctaaggtttctttaaatgacacagccatctcctctattttgtcacatgacacaaacctcccatgttgttag |
34795188 |
T |
|
| Q |
505 |
aaaagttaagttgtcgtcaattaaagaatagaaacacacgcgtcttcttattcctttcactctggttataaactgcatgtacaccttttcagtttctctt |
604 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |||||| || ||||||||||||||||| |
|
|
| T |
34795187 |
aaaagttaagttgtcgtcaattaaagaatagaaacacacgcctcttcttattcccttcactctggttataaattgcatgcacgccttttcagtttctctt |
34795088 |
T |
|
| Q |
605 |
ctctgtaacgcgttctaa-nnnnnnncatcatccatgcttttcctccatagaagcattggacaacagctaaatcattgggtatagttgcattcatactca |
703 |
Q |
| |
|
|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
34795087 |
ctctctaacgcgttctaattttttttcatcatccatgcttttcctccatagaagcattggacaacagccaaatcattgggtatagttgcattcatactca |
34794988 |
T |
|
| Q |
704 |
tccttgttcgttgcattgggtatcgtttctttcatcatcccttctcatccttgcccgccttcgttttcatctcaccgtcattttct |
789 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
34794987 |
tccttgttcgttgcattgggtatcgtttctttcatcatcccttctcatccttgctcgccttcgttttcatctcaccgtcattttct |
34794902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 631 - 735
Target Start/End: Original strand, 16911365 - 16911469
Alignment:
| Q |
631 |
atcatccatgcttttcctccatagaagcattggacaacagctaaatcattgggtatagttgcattcatactcatccttgttcgttgcattgggtatcgtt |
730 |
Q |
| |
|
||||||||||||||| ||| || |||||||||||||| ||||||||||||| ||||||||| | ||| ||||||||||| ||||||||||||||| || |
|
|
| T |
16911365 |
atcatccatgctttttctctatcgaagcattggacaatggctaaatcattggatatagttgcttgaataatcatccttgtttgttgcattgggtatcatt |
16911464 |
T |
|
| Q |
731 |
tcttt |
735 |
Q |
| |
|
||||| |
|
|
| T |
16911465 |
tcttt |
16911469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 540 - 607
Target Start/End: Original strand, 16911266 - 16911333
Alignment:
| Q |
540 |
acacgcgtcttcttattcctttcactctggttataaactgcatgtacaccttttcagtttctcttctc |
607 |
Q |
| |
|
|||||| |||||| |||||||||||||| |||||||| ||||| |||| |||||| |||||||||| |
|
|
| T |
16911266 |
acacgcctcttctcattcctttcactctagttataaagtgcatatacatattttcatcttctcttctc |
16911333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 2e-29; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 630 - 740
Target Start/End: Complemental strand, 38303398 - 38303288
Alignment:
| Q |
630 |
catcatccatgcttttcctccatagaagcattggacaacagctaaatcattgggtatagttgcattcatactcatccttgttcgttgcattgggtatcgt |
729 |
Q |
| |
|
||||||| ||| | ||||||||| |||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||| ||||| | |
|
|
| T |
38303398 |
catcatcgatgttgttcctccatggaagcattggacaacagctaaatcattgggtataattgctttcatactcatccttgtctgttgcattatgtatcat |
38303299 |
T |
|
| Q |
730 |
ttctttcatca |
740 |
Q |
| |
|
||||||||||| |
|
|
| T |
38303298 |
ttctttcatca |
38303288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 632 - 738
Target Start/End: Original strand, 49677039 - 49677145
Alignment:
| Q |
632 |
tcatccatgcttttcctccatagaagcattggacaacagctaaatcattgggtatagttgcattcatactcatccttgttcgttgcattgggtatcgttt |
731 |
Q |
| |
|
||||| || |||||| || || |||||||| ||||| || ||||||||| |||||| |||| |||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
49677039 |
tcatcgattcttttcttctatggaagcattagacaatagttaaatcattaggtataattgctttcatacttatcattgttcgttgcattgggtatcgttt |
49677138 |
T |
|
| Q |
732 |
ctttcat |
738 |
Q |
| |
|
||||||| |
|
|
| T |
49677139 |
ctttcat |
49677145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 541 - 604
Target Start/End: Original strand, 49676939 - 49677002
Alignment:
| Q |
541 |
cacgcgtcttcttattcctttcactctggttataaactgcatgtacaccttttcagtttctctt |
604 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||||| ||||| |||| ||||||||||||||| |
|
|
| T |
49676939 |
cacgcctcttctcattcctttcactctggttataaattgcatacacactttttcagtttctctt |
49677002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 447 - 517
Target Start/End: Original strand, 26154485 - 26154555
Alignment:
| Q |
447 |
aaatgacactgacatctcctctattttgtcacatgacacaaacctctcatgttgttagaaaagttaagttg |
517 |
Q |
| |
|
||||||||| |||| | ||||||||||||||||| || |||||||| ||| |||||||| ||||||||| |
|
|
| T |
26154485 |
aaatgacacagacaccccctctattttgtcacataacccaaacctccgctgtcgttagaaacgttaagttg |
26154555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 447 - 517
Target Start/End: Original strand, 26167783 - 26167853
Alignment:
| Q |
447 |
aaatgacactgacatctcctctattttgtcacatgacacaaacctctcatgttgttagaaaagttaagttg |
517 |
Q |
| |
|
||||||||| |||| | ||||||||||||||||| || |||||||| ||| |||||||| ||||||||| |
|
|
| T |
26167783 |
aaatgacacagacaccccctctattttgtcacataacccaaacctccgctgtcgttagaaacgttaagttg |
26167853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 4e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 630 - 757
Target Start/End: Complemental strand, 30332822 - 30332696
Alignment:
| Q |
630 |
catcatccatgcttttcctccatagaagcattggacaacagctaaatcattgggtatagttgcattcatactcatccttgttcgttgcattgggtatcgt |
729 |
Q |
| |
|
||||||| ||||||||||||||| ||||||||| ||||||||||| ||||| | ||||||||| ||| |||| |||| ||||| |||||||| | ||| | |
|
|
| T |
30332822 |
catcatcgatgcttttcctccatggaagcattgcacaacagctaattcattcgatatagttgctttcgtacttatccctgttcattgcattgtgcatcat |
30332723 |
T |
|
| Q |
730 |
ttctttcatcatcccttctcatccttgc |
757 |
Q |
| |
|
|||||||||||| | ||||||||||||| |
|
|
| T |
30332722 |
ttctttcatcat-cattctcatccttgc |
30332696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 666 - 741
Target Start/End: Original strand, 12139979 - 12140053
Alignment:
| Q |
666 |
aacagctaaatcattgggtatagttgcattcatactcatccttgttcgttgcattgggtatcgtttctttcatcat |
741 |
Q |
| |
|
|||| ||||| ||||| |||||||||| || |||||||||||||| |||||||| |||||||||| ||||||||| |
|
|
| T |
12139979 |
aacaactaaagcattgtgtatagttgcttttgtactcatccttgtttgttgcatt-ggtatcgtttttttcatcat |
12140053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 547 - 605
Target Start/End: Complemental strand, 17364612 - 17364554
Alignment:
| Q |
547 |
tcttcttattcctttcactctggttataaactgcatgtacaccttttcagtttctcttc |
605 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| | || |||||| ||||||||| |
|
|
| T |
17364612 |
tcttctcattcctttcactctggttataaactgcatacaaacattttcaatttctcttc |
17364554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University