View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5285_high_6 (Length: 364)
Name: NF5285_high_6
Description: NF5285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5285_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 1 - 358
Target Start/End: Original strand, 47434842 - 47435196
Alignment:
| Q |
1 |
taaagaatagtaagaaattttcaattgttatccccaacatcacaagactattaaaggaagtttcccattcattttagttcgttcacataaggaatgaatc |
100 |
Q |
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| T |
47434842 |
taaataatagtaagaaattttcaattgttatccccaacatcacaagactatttaaggaagtttcccattcattttagttctttcacataaggaatgaatc |
47434941 |
T |
|
| Q |
101 |
caaaatttcggccttaacaatcccttgccttaattagaactattcaatgacgcgtcacaagactagccaaatacacacaatgtgaatgaatgatgctatn |
200 |
Q |
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| T |
47434942 |
caaaatttcggccttaaaaatcccttgccttaattagaactattcaatgacgcgtcacaagactagccaaatacacacaatgtgaatgaatgatgctat- |
47435040 |
T |
|
| Q |
201 |
nnnnnnnnnncatatcaggatgagtaaataccacgtgtgtctttatcatcccagcttgtacaaaaaagccaaatccaattcatcgttcttatcctcacat |
300 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47435041 |
--aaaaaaaacatttcaggatgagtaaataccacgtgtgtctttatcatcccagcttgtacaaaaaagccaaatccaattcatcgttcttatcctcacat |
47435138 |
T |
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| Q |
301 |
caaacacgacacatcctctgtgtttcacccatgtcatccactcagaccccaatccttt |
358 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47435139 |
caaacacgacacatcctctgtgtttcacccatgtcatccactcagaccccaatccttt |
47435196 |
T |
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