View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5285_low_11 (Length: 304)
Name: NF5285_low_11
Description: NF5285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5285_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 34343273 - 34342984
Alignment:
| Q |
1 |
ttttcacctttctcatggattacaaagattccattgtgtgctagaaaacgcatgagtctttccacaagactttgtttagatagtggaacttgtagggttg |
100 |
Q |
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| T |
34343273 |
ttttcacctttctcatggattacaaatattccattgtgtgctagaaaacgcatgagtctttccacaagactttgtttagatattggaacttgtagagttg |
34343174 |
T |
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| Q |
101 |
aaactaagtcagaaagggtaataggttttccatggttgtatattatatctggaatgtttagttgaatagcccatttaagagccatggattttagaaaacc |
200 |
Q |
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| T |
34343173 |
aaactaagtcagagagagtaataggttttccatggttgtagattatgtctggaatgtttagttgaatagcccatttaagagccatggattttagaaaacc |
34343074 |
T |
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| Q |
201 |
aaacatgtgcatgtataagagagattggccttcaaaaagttcagttgcttctaactggttatttgttgaagccataatactacaattgat |
290 |
Q |
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| T |
34343073 |
aaacatgtgcatgtataagagagattggccttcaaaaagttcagttgcttctaactggttatttgttgaagccataatactacaattgat |
34342984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 7 - 269
Target Start/End: Complemental strand, 34330666 - 34330404
Alignment:
| Q |
7 |
cctttctcatggattacaaagattccattgtgtgctagaaaacgcatgagtctttccacaagactttgtttagatagtggaacttgtagggttgaaacta |
106 |
Q |
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|||||| |||||||| ||||||||||| ||||||||||||| ||||||||||||| |||||||| |||| ||||||||||| ||| |||||||||| |
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| T |
34330666 |
cctttcccatggattgcaaagattccaatgtgtgctagaaatcgcatgagtcttttgacaagactagacttagctagtggaacttttagagttgaaacta |
34330567 |
T |
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| Q |
107 |
agtcagaaagggtaataggttttccatggttgtatattatatctggaatgtttagttgaatagcccatttaagagccatggattttagaaaaccaaacat |
206 |
Q |
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| T |
34330566 |
agtcagggagagtaatgggttttccatggttatatattatttctggaatgtttagttgaacagcacatttgagagacatgggttttagagatgcatacat |
34330467 |
T |
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| Q |
207 |
gtgcatgtataagagagattggccttcaaaaagttcagttgcttctaactggttatttgttga |
269 |
Q |
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||| |||||||||||||||| |||| ||| |||||| ||||||||| |||| ||||||||| |
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| T |
34330466 |
gtgtgtgtataagagagattgaccttgaaagagttcaagtgcttctaattggtcatttgttga |
34330404 |
T |
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