View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5285_low_12 (Length: 281)
Name: NF5285_low_12
Description: NF5285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5285_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 271
Target Start/End: Complemental strand, 13535110 - 13534837
Alignment:
| Q |
1 |
aatttcttcccttttttatttggaatgttcttttcaagctaagagtacacatacttcatcatggaattgtatgattgaatgtttgtacaattgatgacat |
100 |
Q |
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| T |
13535110 |
aatttcttcccttttttatttggaatgttcttttcaagctaagagtacacatacttcatcatggaattgtatgattgaatgtttgtacaattgatgacat |
13535011 |
T |
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| Q |
101 |
tatttataatgatttatgattcacactttggtgatgattttggaagtttcgtctaatttttgtcaattctgaatgttttaacaactgcgattgagttact |
200 |
Q |
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| T |
13535010 |
tatttataatgatttatgattcacactttggtgatgattttggaagtttcgtctaatttttgtcaagtgtgaatgttttaacaactgcgattgagttact |
13534911 |
T |
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| Q |
201 |
cttaaatttaattgaagttatatttaaatta---tttattcatatcacatgttatcatcaactcccttcctatg |
271 |
Q |
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| T |
13534910 |
cttaaatttaattgaagttatatttaaattaagttttattgatatcatatgttatcatcaactccctttctatg |
13534837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 60 - 142
Target Start/End: Complemental strand, 31938770 - 31938688
Alignment:
| Q |
60 |
catggaattgtatgattgaatgtttgtacaattgatgacattatttataatgatttatgattcacactttggtgatgattttg |
142 |
Q |
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| T |
31938770 |
catggaattgtatgaatgaatgttcgtacagctgatgacattattgatcatgatttaatattcacatttcggtgatgattttg |
31938688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 62 - 133
Target Start/End: Original strand, 19810367 - 19810438
Alignment:
| Q |
62 |
tggaattgtatgattgaatgtttgtacaattgatgacattatttataatgatttatgattcacactttggtg |
133 |
Q |
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| T |
19810367 |
tggaattgtatgattgaatgtttgtacaattgatgatattatttataatgacttaagattcacactttggtg |
19810438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 62 - 142
Target Start/End: Complemental strand, 9389124 - 9389044
Alignment:
| Q |
62 |
tggaattgtatgattgaatgtttgtacaattgatgacattatttataatgatttatgattcacactttggtgatgattttg |
142 |
Q |
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| T |
9389124 |
tggaattgtatgaatgaatgtttgtacaactgatgacattatttataatgatttaatattcacatttcggtgatgattttg |
9389044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 102
Target Start/End: Complemental strand, 5639024 - 5638984
Alignment:
| Q |
62 |
tggaattgtatgattgaatgtttgtacaattgatgacatta |
102 |
Q |
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| T |
5639024 |
tggaattgtatgaatggatgtttgttcaattgatgacatta |
5638984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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