View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5285_low_13 (Length: 268)
Name: NF5285_low_13
Description: NF5285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5285_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 14393377 - 14393119
Alignment:
| Q |
1 |
tatcgtaaatgaagaacatcaacatcaagactaagaaaatagttaaacatacagaattgtaattacagtgaattgtcgaaatataccttcagcttcactt |
100 |
Q |
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| T |
14393377 |
tatcgtaaatgaagaacatcaacatcaagactaagaaaatagttaaacatacagaattgtaattacaatgaattgtcgaaatataccttcagcttcactt |
14393278 |
T |
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| Q |
101 |
ccaaaatctgggggaacatgttttgccgatggtttcaagcttagcaaaaatcattcagaaaatggcaatgacattccatctcctccaacaggggcattag |
200 |
Q |
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| T |
14393277 |
ccaaaatctgggggaacatgttttgccgatggtttcaagcttagcaaaaatcattcagaaaatggcaatgacattccatctccttcaacaggggcattag |
14393178 |
T |
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| Q |
201 |
ccattcatttagcttcaccttcactttcagccttactatcacgttctccatccctatgct |
260 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14393177 |
cca-tcatttagcttcaccttcactttcagccttactatcacgttctccatccctatgct |
14393119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 108 - 252
Target Start/End: Original strand, 16024420 - 16024567
Alignment:
| Q |
108 |
ctgggggaacatgttttgccgatggtttcaagcttagcaaaaatcattcagaaaatggcaatgacattccatctcctccaacag---gggcattagccat |
204 |
Q |
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| T |
16024420 |
ctgggggaacatgctttgccaatggcttcacatttagaagaaagcgttcagaaaatggtaatgatgttccatctccttcaacatcatgtgcatcagccat |
16024519 |
T |
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| Q |
205 |
tcatttagcttcaccttcactttcagccttactatcacgttctccatc |
252 |
Q |
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|| || ||||||||||||||||||||||||| |||| |||||||||| |
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| T |
16024520 |
tccttcagcttcaccttcactttcagccttatcatcatgttctccatc |
16024567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 155 - 223
Target Start/End: Complemental strand, 14391429 - 14391361
Alignment:
| Q |
155 |
tcagaaaatggcaatgacattccatctcctccaacaggggcattagccattcatttagcttcaccttca |
223 |
Q |
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| T |
14391429 |
tcagaaaatggcaatgacattccatcttcttcaacatgggcatcagctattccttcaacttcaccttca |
14391361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 253
Target Start/End: Original strand, 13882008 - 13882108
Alignment:
| Q |
157 |
agaaaatggcaatgacattccatctcctccaac---aggggcattagccatt--catttagcttcaccttcactttcagccttactatcacgttctccat |
251 |
Q |
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| T |
13882008 |
agaaaatggcaatgacgttccatctccttcaacttcatgcgcattatccattttcatc-agcttcaccttcactttcagccttattatcatgttctgcat |
13882106 |
T |
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| Q |
252 |
cc |
253 |
Q |
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|| |
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| T |
13882107 |
cc |
13882108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 24 - 67
Target Start/End: Original strand, 14358302 - 14358345
Alignment:
| Q |
24 |
atcaagactaagaaaatagttaaacatacagaattgtaattaca |
67 |
Q |
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| T |
14358302 |
atcaagactaaagaaatatttaaacatacagaattgtaattaca |
14358345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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