View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5285_low_14 (Length: 256)
Name: NF5285_low_14
Description: NF5285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5285_low_14 |
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| [»] scaffold0531 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 8 - 240
Target Start/End: Original strand, 13535116 - 13535348
Alignment:
| Q |
8 |
atcaatggaaaagacatactcagccggaatgaggacccttgcccaaaggagtaactccacagctgtcttggcagttacataatagtttgttcatttgcaa |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||| |||||||||||| |
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| T |
13535116 |
atcaatggaaaagacatactcagccggaatgaggacccttgcccaaaggattaactccaaagctgtcttggcagctacataatagttggttcatttgcaa |
13535215 |
T |
|
| Q |
108 |
aagtatagataggaatatcactattttgtactaaatttcttagagcatgtagtcttgtaatctgcttagcttttatgtattatggtggacttaaccacct |
207 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |
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| T |
13535216 |
aagtatagatagaaatatcactattttgtactaaatttcttagagcatgtagtcttgtaatctgcttagcttttctgtattatggtggacttaagcacct |
13535315 |
T |
|
| Q |
208 |
ctttccttaggatcctttcctttacggggatag |
240 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
13535316 |
ctttccttaggatcctttcctttacggggatag |
13535348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0531 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: scaffold0531
Description:
Target: scaffold0531; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 25 - 240
Target Start/End: Original strand, 10307 - 10522
Alignment:
| Q |
25 |
actcagccggaatgaggacccttgcccaaaggagtaactccacagctgtcttggcagttacataatagtttgttcatttgcaaaagtatagataggaata |
124 |
Q |
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||||||||||||||||||||| |||| ||| ||||||||||| |||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||| |
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| T |
10307 |
actcagccggaatgaggacccgtgcctaaaagagtaactccaaagctgtcttggcagctacataatagttggttcatttgcaaaagcatagataggaata |
10406 |
T |
|
| Q |
125 |
tcactattttgtactaaatttcttagagcatgtagtcttgtaatctgcttagcttttatgtattatggtggacttaaccacctctttccttaggatcctt |
224 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |
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| T |
10407 |
tcactattttgtactaaatttcttagagcatgtagtcttgtaatctgcttagcttttctgtattatggtggacttagccacctctttccttaggatcctt |
10506 |
T |
|
| Q |
225 |
tcctttacggggatag |
240 |
Q |
| |
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||||||| ||||||| |
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| T |
10507 |
tcctttatagggatag |
10522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 140; Significance: 2e-73; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 29 - 240
Target Start/End: Complemental strand, 16593837 - 16593626
Alignment:
| Q |
29 |
agccggaatgaggacccttgcccaaaggagtaactccacagctgtcttggcagttacataatagtttgttcatttgcaaaagtatagataggaatatcac |
128 |
Q |
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|||||||||||| |||| |||||||| ||||||| ||| || ||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||| |
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|
| T |
16593837 |
agccggaatgagaacccgtgcccaaaagagtaacgccaaagttgtcttggcagctacataatagttggttcatttgcaaaagcatagataggaatatcac |
16593738 |
T |
|
| Q |
129 |
tattttgtactaaatttcttagagcatgtagtcttgtaatctgcttagcttttatgtattatggtggacttaaccacctctttccttaggatcctttcct |
228 |
Q |
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|
| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |||||||||| ||||| |
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| T |
16593737 |
tgttttgtactaaatttcttagagcgtgtagtcttgtaatctgcttagcttttctgtattatggtggacttagtcacctcttttcttaggatcccttcct |
16593638 |
T |
|
| Q |
229 |
ttacggggatag |
240 |
Q |
| |
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||| ||||||| |
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|
| T |
16593637 |
ttatagggatag |
16593626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 25 - 240
Target Start/End: Original strand, 19852532 - 19852747
Alignment:
| Q |
25 |
actcagccggaatgaggacccttgcccaaaggagtaactccacagctgtcttggcagttacataatagtttgttcatttgcaaaagtatagataggaata |
124 |
Q |
| |
|
||||| |||||||||| |||| |||||||| ||||||||||| || ||||||||||| | |||||||||| ||||||||||||||| ||||||||||||| |
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|
| T |
19852532 |
actcacccggaatgagaacccgtgcccaaaagagtaactccaaagttgtcttggcagcttcataatagttggttcatttgcaaaagcatagataggaata |
19852631 |
T |
|
| Q |
125 |
tcactattttgtactaaatttcttagagcatgtagtcttgtaatctgcttagcttttatgtattatggtggacttaaccacctctttccttaggatcctt |
224 |
Q |
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||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||| | |
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| T |
19852632 |
tcattgttttgtactaaatttcttagagcgtgtagtcttgtaatctgcttagcttttctgtattatggtgtacttagtcacctctttccttaggatccct |
19852731 |
T |
|
| Q |
225 |
tcctttacggggatag |
240 |
Q |
| |
|
||||||| ||||||| |
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|
| T |
19852732 |
tcctttatagggatag |
19852747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 94
Target Start/End: Complemental strand, 24239915 - 24239846
Alignment:
| Q |
25 |
actcagccggaatgaggacccttgcccaaaggagtaactccacagctgtcttggcagttacataatagtt |
94 |
Q |
| |
|
||||||||||||||||||||| |||||||| | ||| ||| | |||| ||||||||| |||||||||||| |
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| T |
24239915 |
actcagccggaatgaggacccgtgcccaaaagggtacctcaaaagctatcttggcagatacataatagtt |
24239846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 62 - 127
Target Start/End: Complemental strand, 16832175 - 16832110
Alignment:
| Q |
62 |
ctccacagctgtcttggcagttacataatagtttgttcatttgcaaaagtatagataggaatatca |
127 |
Q |
| |
|
||||| |||||||||||||| ||||||||||| ||||||||||| || |||| ||||||||||| |
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|
| T |
16832175 |
ctccaaagctgtcttggcagatacataatagtcggttcatttgcatcagaatagctaggaatatca |
16832110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 105; Significance: 2e-52; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 33 - 221
Target Start/End: Original strand, 31067232 - 31067420
Alignment:
| Q |
33 |
ggaatgaggacccttgcccaaaggagtaactccacagctgtcttggcagttacataatagtttgttcatttgcaaaagtatagataggaatatcactatt |
132 |
Q |
| |
|
||||||||||||| |||| ||| | ||||||||| |||||||||||| |||| ||||||| || |||||||||||| ||||||||||||||||||||| |
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|
| T |
31067232 |
ggaatgaggacccgtgcctaaaagtgtaactccaatcctgtcttggcagctacaaaatagttggtacatttgcaaaagcatagataggaatatcactatt |
31067331 |
T |
|
| Q |
133 |
ttgtactaaatttcttagagcatgtagtcttgtaatctgcttagcttttatgtattatggtggacttaaccacctctttccttaggatc |
221 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||||| |
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|
| T |
31067332 |
ttgtattaaatttcttagagagggtagtcttgtaatcactttagcttttctgtattatggtggacttagccacctctttccttaggatc |
31067420 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 29 - 117
Target Start/End: Original strand, 29346850 - 29346938
Alignment:
| Q |
29 |
agccggaatgaggacccttgcccaaaggagtaactccacagctgtcttggcagttacataatagtttgttcatttgcaaaagtatagat |
117 |
Q |
| |
|
||||||||||||||||| ||| |||| ||||| ||||| ||| | |||| ||| |||||||||||| || || |||||| ||||||||| |
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|
| T |
29346850 |
agccggaatgaggacccgtgcacaaaagagtacctccaaagccgccttgacagatacataatagttggtccaattgcaagagtatagat |
29346938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 217
Target Start/End: Complemental strand, 26796723 - 26796671
Alignment:
| Q |
165 |
taatctgcttagcttttatgtattatggtggacttaaccacctctttccttag |
217 |
Q |
| |
|
|||| ||| |||||||| | ||| |||||||||||||| |||||||||||||| |
|
|
| T |
26796723 |
taatttgcctagcttttctctataatggtggacttaacaacctctttccttag |
26796671 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 25 - 181
Target Start/End: Complemental strand, 8831294 - 8831139
Alignment:
| Q |
25 |
actcagccggaatgaggacccttgcccaaaggagtaactccacagctgtcttggcagttacataatagtttgttcatttgcaaaagtatagataggaata |
124 |
Q |
| |
|
||||||||||||||||||||| ||| |||| | ||||||||| || ||||| | ||| ||| ||||||| |||||||||||||| ||| ||||||||| |
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|
| T |
8831294 |
actcagccggaatgaggacccgtgctcaaaagtgtaactccaaagttgtctcgacagctactgaatagttagttcatttgcaaaacaatatataggaata |
8831195 |
T |
|
| Q |
125 |
--tcacta-ttttgtactaaatttcttagagcatgtagtcttgtaatctgcttagctttt |
181 |
Q |
| |
|
|||||| ||||||| |||||||||| || | |||||||||||||||||||||||| |
|
|
| T |
8831194 |
tctcactacttttgtattaaatttctttga----gaagtcttgtaatctgcttagctttt |
8831139 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 166 - 214
Target Start/End: Complemental strand, 3072444 - 3072396
Alignment:
| Q |
166 |
aatctgcttagcttttatgtattatggtggacttaaccacctctttcct |
214 |
Q |
| |
|
|||||| ||||||||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
3072444 |
aatctgtttagcttttctgtattatggtggacttagccacctctttcct |
3072396 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 221
Target Start/End: Original strand, 13502779 - 13502828
Alignment:
| Q |
172 |
cttagcttttatgtattatggtggacttaaccacctctttccttaggatc |
221 |
Q |
| |
|
|||||||||| |||||||||||||| ||| ||||||| |||||||||||| |
|
|
| T |
13502779 |
cttagcttttctgtattatggtggaattagccacctccttccttaggatc |
13502828 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 107
Target Start/End: Complemental strand, 14296330 - 14296248
Alignment:
| Q |
25 |
actcagccggaatgaggacccttgcccaaaggagtaactccacagctgtcttggcagttacataatagtttgttcatttgcaa |
107 |
Q |
| |
|
|||||||||||||||| || | || ||||| | ||| ||||| || || |||||||| |||||||||||| ||||| |||||| |
|
|
| T |
14296330 |
actcagccggaatgagcactcgtgtccaaaagggtacctccaaagatgccttggcagatacataatagttggttcaattgcaa |
14296248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 106
Target Start/End: Original strand, 31092364 - 31092445
Alignment:
| Q |
25 |
actcagccggaatgaggacccttgcccaaaggagtaactccacagctgtcttggcagttacataatagtttgttcatttgca |
106 |
Q |
| |
|
||||||||||||||||||| | |||||||| | ||| ||||| || |||||| ||| |||| ||||||| || |||||||| |
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|
| T |
31092364 |
actcagccggaatgaggactcgtgcccaaaagggtacctccaaagtcgtcttgccagatacagaatagttggtccatttgca |
31092445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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