View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5285_low_17 (Length: 237)
Name: NF5285_low_17
Description: NF5285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5285_low_17 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 152; Significance: 1e-80; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 37 - 216
Target Start/End: Complemental strand, 10428917 - 10428738
Alignment:
| Q |
37 |
tcttatcatacataaattgtgacttttgttgttagacatttggcatgctataaatactaaaacactcttactcatcaaactagaccttatcccttataaa |
136 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
10428917 |
tcttatcatacataaattgtgacttttgttgttaaacatttggcatgctataaatgctaaaacagtcttactcatcaaactagaccttatcccttataaa |
10428818 |
T |
|
| Q |
137 |
atatattctttcgaattctatattcttaattattttcctttagtggttcctcttggtggatgttggtatgaacccacgtc |
216 |
Q |
| |
|
| ||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10428817 |
aaatattctttaggattctatattcttaattattttccattagtggttcctcttggtggatgttggtatgaacccacgtc |
10428738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 10466016 - 10465882
Alignment:
| Q |
1 |
ttttatctcttatcatacatttttgttgagaaaatatcttatcatacataaattgtgacttttgttgttagacatttggcatgctataaatactaaaaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || |||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
10466016 |
ttttatctcttatcatacatttttgttgagaacatctcttatcatacataaagtgggacttttgttgttaaacatttggcatgctataaatactaaaaca |
10465917 |
T |
|
| Q |
101 |
ctcttactcatcaaactagaccttatcccttataa |
135 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
10465916 |
gtcttactcatcaaactagaccttatcccttataa |
10465882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 129 - 210
Target Start/End: Complemental strand, 10465841 - 10465760
Alignment:
| Q |
129 |
cttataaaatatattctttcgaattctatattcttaattattttcctttagtggttcctcttggtggatgttggtatgaacc |
210 |
Q |
| |
|
||||||||| |||||||| |||| |||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |
|
|
| T |
10465841 |
cttataaaaaatattcttccgaactctatattcttaattattttccattagtggttcctcttggtggattttggtatgaacc |
10465760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University