View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5285_low_4 (Length: 565)
Name: NF5285_low_4
Description: NF5285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5285_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 527; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 1 - 547
Target Start/End: Complemental strand, 13234547 - 13234001
Alignment:
| Q |
1 |
aggaagaagtatataaatgggcctctaagttctaaagcaaaccaaacaatggcagcataggctaaagcttggagcgcaagaaacggcatgtgagtgatta |
100 |
Q |
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| T |
13234547 |
aggaagaagtatataaatgggcctctaagttctaaagcaaaccaaacaatggcagcataggctaaagcttggagcgcaagaaacggcatgtgagtgatta |
13234448 |
T |
|
| Q |
101 |
ggctagctatggtgtaacaagaagctctataggcattatgagaagtttcgcggatgaagatgaacctctcttggatgaaggcagggaccgcatcatttga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
13234447 |
ggctagctatggtgtaacaagaagctctataggcattatgagaagtttcgcggatgaagatgaacctctcttggatgaaggcagggacggcatcatttga |
13234348 |
T |
|
| Q |
201 |
agagaagaaaaacagacacactgtgaaaatgaagaaactgagacgatttgtgattccttgtaaggtattttttggattgtggaacattgttgccatcata |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13234347 |
agagaagaaaaacagacacactgtgaaaatgaagaaactgagacgatttgtgattccttgtaaggtattttttggattgtggaacattgttgccatcata |
13234248 |
T |
|
| Q |
301 |
actcccatgaaggtgaggaccattagtcttgatagaaaaagctcgggggttctccgtatgttggtgaagttgcggcgcattaggatccatgtctctgcta |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |
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| T |
13234247 |
actcccatgaaggtgaggaccattagtcttgatagaaaaagctcgggggttctccgtatgtttgtgaagttgcggcgcattaggatccatgtctctccta |
13234148 |
T |
|
| Q |
401 |
tgtaggaatttgcaaactttggacctagatgttcttgtgagctattggttggtgtaaggtagtcattctcgtcgactacgtagtcgctgctatgtggtgt |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
13234147 |
tgtaggaatttgcaaactttggacctagatgttcttgtgagctatttgttggtgtaaggtagtcattctcgtcgactacgtagtcactgctatgtggtgt |
13234048 |
T |
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| Q |
501 |
tggtgttgctggaaggatttcacttgagtatgtgtagatgccagggg |
547 |
Q |
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| T |
13234047 |
tggtgttgctggaaggatttcacttgagtatgtgtagatgccagggg |
13234001 |
T |
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