View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5285_low_5 (Length: 453)

Name: NF5285_low_5
Description: NF5285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5285_low_5
NF5285_low_5
[»] chr7 (5 HSPs)
chr7 (16-433)||(1287063-1287480)
chr7 (313-379)||(19989079-19989145)
chr7 (303-366)||(31448377-31448440)
chr7 (303-381)||(11575439-11575517)
chr7 (316-379)||(5516302-5516365)
[»] chr1 (3 HSPs)
chr1 (313-366)||(11248652-11248705)
chr1 (304-349)||(31922871-31922916)
chr1 (299-379)||(6380146-6380226)
[»] chr2 (5 HSPs)
chr2 (313-365)||(14949243-14949295)
chr2 (303-366)||(12457017-12457080)
chr2 (301-366)||(33810614-33810679)
chr2 (304-366)||(38985126-38985188)
chr2 (303-372)||(39028769-39028838)
[»] chr8 (2 HSPs)
chr8 (302-366)||(24802568-24802632)
chr8 (303-364)||(38125599-38125660)
[»] chr5 (2 HSPs)
chr5 (313-364)||(21743029-21743080)
chr5 (304-351)||(30264578-30264625)
[»] chr3 (4 HSPs)
chr3 (304-366)||(42380564-42380626)
chr3 (304-366)||(42409278-42409340)
chr3 (314-370)||(42380731-42380787)
chr3 (314-370)||(42409445-42409501)
[»] chr6 (1 HSPs)
chr6 (304-360)||(32006908-32006964)
[»] chr4 (1 HSPs)
chr4 (303-379)||(32564829-32564905)


Alignment Details
Target: chr7 (Bit Score: 390; Significance: 0; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 16 - 433
Target Start/End: Complemental strand, 1287480 - 1287063
Alignment:
Q  16 atggttaatgacaagacaaaatacaatgttgcaccgagacatgtatttgtctcgttgaaagaccgaaatgagagcaacctaactattatcacccatattt 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1287480 atggttaatgacaagacaaaatacaatgttgcaccgagacatgtatttatctcgttgaaagaccgaaatgagagcaacctaactattatcacccatattt 1287381  T
Q  116 ataagaacaaagtacgtattgatcaactttgaaaggtcctagaatataaatgaaacctttgatttttgagagatatatatattttggatgcatccagatt 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1287380 ataagaacaaagtacgtattgatcaactttgaaaggtcctagaatataaatgaaacctttgatttttgagagatatatatattttggatgcatccagatt 1287281  T
Q  216 ccaaagagttgttgctaatttttgcaattgtattgatcattgataccacacacaaaattaatggatacgtgttaccattggttgcaaatactctcttcgt 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1287280 ccaaagagttgttgctaatttttgcaattgtattgatcattgataccacacacaaaattaatggatacgtgttaccattggttgcaaatactctcttcgt 1287181  T
Q  316 ccctatatctaagtactcttttattaaaggcaaatggtgcctacatataggaacgaaggaagtattgtcttacattggaaaatataaaatacagttattt 415  Q
    ||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||    
T  1287180 ccctatatctaagcactcttttattaaagacaaatggtgcctacatataagaacggagggagtattgtcttacattggaaaatataaaatacagttattt 1287081  T
Q  416 ttaaatgaagtattgtct 433  Q
    || |||||||||||||||    
T  1287080 ttgaatgaagtattgtct 1287063  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 313 - 379
Target Start/End: Complemental strand, 19989145 - 19989079
Alignment:
Q  313 cgtccctatatctaagtactcttttattaaaggcaaatggtgcctacatataggaacgaaggaagta 379  Q
    |||||||||||||||| ||  |||||||| ||||||||||||| |||||||||||||| ||| ||||    
T  19989145 cgtccctatatctaagcaccattttattagaggcaaatggtgcttacatataggaacggagggagta 19989079  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 303 - 366
Target Start/End: Complemental strand, 31448440 - 31448377
Alignment:
Q  303 atactctcttcgtccctatatctaagtactcttttattaaaggcaaatggtgcctacatatagg 366  Q
    ||||||||| |||||||||||||||| || ||||||||| | ||||| ||||| ||||||||||    
T  31448440 atactctctccgtccctatatctaagcacccttttattagatgcaaagggtgcttacatatagg 31448377  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 303 - 381
Target Start/End: Complemental strand, 11575517 - 11575439
Alignment:
Q  303 atactctcttcgtccctatatctaagtactcttttattaaaggcaaatggtgcctacatataggaacgaaggaagtatt 381  Q
    ||||||||| |||||||||||||||| |   |||||||| |||||||  |||| |||||||| ||||| ||||||||||    
T  11575517 atactctctccgtccctatatctaagcatcattttattagaggcaaaatgtgcttacatataagaacggaggaagtatt 11575439  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 316 - 379
Target Start/End: Complemental strand, 5516365 - 5516302
Alignment:
Q  316 ccctatatctaagtactcttttattaaaggcaaatggtgcctacatataggaacgaaggaagta 379  Q
    |||||||| |||| ||  |||||||||||| ||||||||| |||||||||||||| ||| ||||    
T  5516365 ccctatatgtaagcaccattttattaaaggtaaatggtgcttacatataggaacggagggagta 5516302  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 313 - 366
Target Start/End: Original strand, 11248652 - 11248705
Alignment:
Q  313 cgtccctatatctaagtactcttttattaaaggcaaatggtgcctacatatagg 366  Q
    |||||||||||||||| ||| |||||||| ||||||||||||| ||||||||||    
T  11248652 cgtccctatatctaagcactattttattagaggcaaatggtgcttacatatagg 11248705  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 304 - 349
Target Start/End: Complemental strand, 31922916 - 31922871
Alignment:
Q  304 tactctcttcgtccctatatctaagtactcttttattaaaggcaaa 349  Q
    |||||||| |||||||||||||||| || |||||||||||||||||    
T  31922916 tactctctccgtccctatatctaagcacccttttattaaaggcaaa 31922871  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 299 - 379
Target Start/End: Original strand, 6380146 - 6380226
Alignment:
Q  299 gcaaatactctcttcgtccctatatctaagtactcttttattaaaggcaaatggtgcctacatataggaacgaaggaagta 379  Q
    |||||||||| || | |||||||||||||| || ||||||||| || |||| ||||| ||| || ||||||| ||| ||||    
T  6380146 gcaaatactccctccatccctatatctaagcacccttttattagagacaaaaggtgcttacctagaggaacggagggagta 6380226  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 313 - 365
Target Start/End: Original strand, 14949243 - 14949295
Alignment:
Q  313 cgtccctatatctaagtactcttttattaaaggcaaatggtgcctacatatag 365  Q
    |||||||| ||||||| |||||||||||| ||||||||||||| |||||||||    
T  14949243 cgtccctacatctaagcactcttttattagaggcaaatggtgcttacatatag 14949295  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 303 - 366
Target Start/End: Original strand, 12457017 - 12457080
Alignment:
Q  303 atactctcttcgtccctatatctaagtactcttttattaaaggcaaatggtgcctacatatagg 366  Q
    |||||| || |||||||||||||||| || ||||||||| ||||||| ||||| ||||||||||    
T  12457017 atactccctccgtccctatatctaagcacccttttattagaggcaaagggtgcttacatatagg 12457080  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 301 - 366
Target Start/End: Original strand, 33810614 - 33810679
Alignment:
Q  301 aaatactctcttcgtccctatatctaagtactcttttattaaaggcaaatggtgcctacatatagg 366  Q
    |||||||| |||||||||||||| |||| || ||||||||| ||| |||| |||| ||||||||||    
T  33810614 aaatactcccttcgtccctatatgtaagcacccttttattagaggaaaattgtgcttacatatagg 33810679  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 304 - 366
Target Start/End: Original strand, 38985126 - 38985188
Alignment:
Q  304 tactctcttcgtccctatatctaagtactcttttattaaaggcaaatggtgcctacatatagg 366  Q
    ||||| || ||||||||||| |||| |||||||||||| ||| ||||||||| || |||||||    
T  38985126 tactccctccgtccctatatataagcactcttttattagagggaaatggtgcttatatatagg 38985188  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 372
Target Start/End: Complemental strand, 39028838 - 39028769
Alignment:
Q  303 atactctcttcgtccctatatctaagtactcttttattaaaggcaaatggtgcctacatataggaacgaa 372  Q
    |||||| || |||||||||||| ||| || ||||| ||| | ||||||||||| ||||||||| ||||||    
T  39028838 atactccctccgtccctatatcaaagcacccttttgttagatgcaaatggtgcttacatatagaaacgaa 39028769  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 302 - 366
Target Start/End: Complemental strand, 24802632 - 24802568
Alignment:
Q  302 aatactctcttcgtccctatatctaagtactcttttattaaaggcaaatggtgcctacatatagg 366  Q
    |||||||| | |||||||||||||||| || ||||||||| | ||||| ||||| ||||||||||    
T  24802632 aatactctatccgtccctatatctaagcacccttttattagatgcaaaaggtgcttacatatagg 24802568  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 364
Target Start/End: Complemental strand, 38125660 - 38125599
Alignment:
Q  303 atactctcttcgtccctatatctaagtactcttttattaaaggcaaatggtgcctacatata 364  Q
    |||||| || ||||||||||| |||| || ||||||||| ||||||| ||||| ||||||||    
T  38125660 atactccctccgtccctatatgtaagcacccttttattagaggcaaaaggtgcttacatata 38125599  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 364
Target Start/End: Complemental strand, 21743080 - 21743029
Alignment:
Q  313 cgtccctatatctaagtactcttttattaaaggcaaatggtgcctacatata 364  Q
    |||||||||||||||| |||||||||||| |||||||  |||| ||||||||    
T  21743080 cgtccctatatctaagcactcttttattagaggcaaagagtgcttacatata 21743029  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 304 - 351
Target Start/End: Complemental strand, 30264625 - 30264578
Alignment:
Q  304 tactctcttcgtccctatatctaagtactcttttattaaaggcaaatg 351  Q
    ||||| || |||||||||||||||| |||||||||||| |||||||||    
T  30264625 tactccctccgtccctatatctaagcactcttttattagaggcaaatg 30264578  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 304 - 366
Target Start/End: Complemental strand, 42380626 - 42380564
Alignment:
Q  304 tactctcttcgtccctatatctaagtactcttttattaaaggcaaatggtgcctacatatagg 366  Q
    ||||| || |||||||||||||||  || ||||||||| ||||||| ||||| ||||||||||    
T  42380626 tactccctccgtccctatatctaaaaacccttttattagaggcaaagggtgcttacatatagg 42380564  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 304 - 366
Target Start/End: Complemental strand, 42409340 - 42409278
Alignment:
Q  304 tactctcttcgtccctatatctaagtactcttttattaaaggcaaatggtgcctacatatagg 366  Q
    ||||| || |||||||||||||||  || ||||||||| ||||||| ||||| ||||||||||    
T  42409340 tactccctccgtccctatatctaaaaacccttttattagaggcaaagggtgcttacatatagg 42409278  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 314 - 370
Target Start/End: Complemental strand, 42380787 - 42380731
Alignment:
Q  314 gtccctatatctaagtactcttttattaaaggcaaatggtgcctacatataggaacg 370  Q
    ||||||||||||||  || ||||||||| ||||||| | ||| ||||||||||||||    
T  42380787 gtccctatatctaataacccttttattagaggcaaaggatgcttacatataggaacg 42380731  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 314 - 370
Target Start/End: Complemental strand, 42409501 - 42409445
Alignment:
Q  314 gtccctatatctaagtactcttttattaaaggcaaatggtgcctacatataggaacg 370  Q
    ||||||||||||||  || ||||||||| ||||||| | ||| ||||||||||||||    
T  42409501 gtccctatatctaataacccttttattagaggcaaaggatgcttacatataggaacg 42409445  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 304 - 360
Target Start/End: Original strand, 32006908 - 32006964
Alignment:
Q  304 tactctcttcgtccctatatctaagtactcttttattaaaggcaaatggtgcctaca 360  Q
    |||||| | ||||||||||||||||||| ||||||||| | ||||| ||||| ||||    
T  32006908 tactctatccgtccctatatctaagtacccttttattagatgcaaacggtgcttaca 32006964  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 379
Target Start/End: Complemental strand, 32564905 - 32564829
Alignment:
Q  303 atactctcttcgtccctatatctaagtactcttttattaaaggcaaatggtgcctacatataggaacgaaggaagta 379  Q
    |||||| || ||||||||||| |||| || ||||||||| |||||||  |||| |||||||||| ||| ||| ||||    
T  32564905 atactccctccgtccctatatgtaagcacccttttattagaggcaaagagtgcttacatatagggacggagggagta 32564829  T

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