View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5285_low_6 (Length: 434)
Name: NF5285_low_6
Description: NF5285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5285_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 98; Significance: 4e-48; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 14393422 - 14393559
Alignment:
| Q |
1 |
cattgaagagataatagtgttggacttaagtcccacatcgctcaaaataaagatatgaagccaaaccctctaatataaaaatcaaactcctatgatatcg |
100 |
Q |
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| T |
14393422 |
cattgaagagataatagtgttggacttaagtcccacatcggtcaaaataaagatatgaagccaaaccctctaatataaaaatcaaactcctatggtttgg |
14393521 |
T |
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| Q |
101 |
tttgcacagttttcaaagcctacttgcctcttgattaa |
138 |
Q |
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| T |
14393522 |
atcgcataattttcgaagcctacttgcctctagattaa |
14393559 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 181 - 297
Target Start/End: Original strand, 14393639 - 14393754
Alignment:
| Q |
181 |
gccttaatttagatttaggtggcttagaacattaactaagcaagtatccaaaagtgaaaagtttgttatcattttatgttttagaaaagatcgaactgat |
280 |
Q |
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| T |
14393639 |
gccttaatttagatttaggcggctttgaacttaaactaggcaagtatccaaaagggaaaagtttgttagcattttatgatatag-aaagatcgaactgat |
14393737 |
T |
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| Q |
281 |
caattaagtaaatatat |
297 |
Q |
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| T |
14393738 |
caattaagaaaatatat |
14393754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 14396300 - 14396391
Alignment:
| Q |
1 |
cattgaagagataatagtgttggacttaagtcccacatcgctcaaaataaagatatgaagc-caaaccctctaatataaaaatcaaactcct |
91 |
Q |
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| T |
14396300 |
cattgaagagataatagtgttagacttatgccccacatcgctcaaaataaagacatgaagctaaaaccctctaatataaaaatcaaactcct |
14396391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 91
Target Start/End: Original strand, 14390339 - 14390406
Alignment:
| Q |
24 |
acttaagtcccacatcgctcaaaataaagatatgaagccaaaccctctaatataaaaatcaaactcct |
91 |
Q |
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|||||| |||||||||||| ||| | |||| ||| |||||| ||||||||||||||||| ||||||| |
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| T |
14390339 |
acttaaatcccacatcgctgaaagtcaagacgtgaggccaaaacctctaatataaaaatcgaactcct |
14390406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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