View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5285_low_8 (Length: 357)
Name: NF5285_low_8
Description: NF5285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5285_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 18 - 349
Target Start/End: Original strand, 18362303 - 18362634
Alignment:
| Q |
18 |
agtgatggcatgcttaagccactggaaatagaactcagcttgccgggatcatctctagctcttgaaatccaaagagtttttcttccatcaaagcaaggga |
117 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18362303 |
agtgatggcatgcttaagccactggcaatagaactcagcttgccgggatcatctctagctcttgaaatccaaagagtttttcttccatcaaagcaaggga |
18362402 |
T |
|
| Q |
118 |
cacaagcagcactttggcagcttgctaaagctcatgttttagctaatgataatttttaccatatactagtaagccattggtgatactttatgaagtcaaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18362403 |
cacaagcagcactttggcagcttgctaaagctcatgttttagctaatgataatttttaccatatactagtaagccattggtgatactttatgaagtcaaa |
18362502 |
T |
|
| Q |
218 |
gagattatttccccttttaagtggtttaaataaagtgcacatgtacaactggaatagtttaacaattaaacatgggattgtagatttgatcatgtttata |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18362503 |
gagattatttccccttttaagtggtttaaataaagtgcacatgtacaactggaatagtttaacaattaaacatgggattgtagatttgatcatgtttata |
18362602 |
T |
|
| Q |
318 |
tatgaaatttaattattgaattacagtattat |
349 |
Q |
| |
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||||||||||||||||||||||||||| |||| |
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| T |
18362603 |
tatgaaatttaattattgaattacagtgttat |
18362634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 18 - 349
Target Start/End: Original strand, 3018464 - 3018801
Alignment:
| Q |
18 |
agtgatggcatgcttaagccactggaaatagaactcagcttgccgggatcatctctagctcttgaaatccaaagagtttttcttccatcaaagcaaggga |
117 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3018464 |
agtgatggcatgcttaagccactggcaatagaactcagcttgccgggatcatctctagctcttgaaatccaaagagtttttcttccatcaaagcaaggga |
3018563 |
T |
|
| Q |
118 |
cacaagcagcactttggcagcttgctaaagctcatgttttagctaatgataatttttaccatatactagtaagccattggtga--ta----ctttatgaa |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || ||||||||| |
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| T |
3018564 |
cacaagcagcactttggcagcttgctaaagctcatgttttagctaatgatactttttaccatatactagtaagccattggtgagttaaactctttatgaa |
3018663 |
T |
|
| Q |
212 |
gtcaaagagattatttccccttttaagtggtttaaataaagtgcacatgtacaactggaatagtttaacaattaaacatgggattgtagatttgatcatg |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
3018664 |
gtcaaagagattatttccccttttaagtggtttaaataaagtgcacatgtacaacgggaatagcttaacaattaaacatgggattgtagatttgatcatg |
3018763 |
T |
|
| Q |
312 |
tttatatatgaaatttaattattgaattacagtattat |
349 |
Q |
| |
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||||||||||||||||||||||||||||||||| |||| |
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| T |
3018764 |
tttatatatgaaatttaattattgaattacagtgttat |
3018801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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