View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5285_low_9 (Length: 320)
Name: NF5285_low_9
Description: NF5285
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5285_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 75; Significance: 2e-34; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 39169995 - 39169886
Alignment:
| Q |
1 |
agtagcataggaaatgtgttttggattttgttgggtaaaaagtaatggaaggtggataacttaacttatattatattagatgatgattatgcaacgggta |
100 |
Q |
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| T |
39169995 |
agtaccataggaaatgtgttttggattttgttgggtaaaaagtaatggaaggtggataagttaacttat-----attagatgatgattatgcaacggata |
39169901 |
T |
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| Q |
101 |
agttaactgatagtt |
115 |
Q |
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| T |
39169900 |
agctaaccgatagtt |
39169886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 104 - 176
Target Start/End: Complemental strand, 39169755 - 39169683
Alignment:
| Q |
104 |
taactgatagttaattgtgaataagatagcgtattatatttgtaacgtttgataaaattaacattaaattagt |
176 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39169755 |
taactgatagttaattgtgaataagatagcgtattatatttgtaacgtttgataaaattaacattaaattagt |
39169683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 108 - 176
Target Start/End: Complemental strand, 39169665 - 39169597
Alignment:
| Q |
108 |
tgatagttaattgtgaataagatagcgtattatatttgtaacgtttgataaaattaacattaaattagt |
176 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39169665 |
tgatagttaattgtgaataagatagtgtattatatttgtaacgtttgataaaattaacattaaattagt |
39169597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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