View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5286_high_13 (Length: 306)

Name: NF5286_high_13
Description: NF5286
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5286_high_13
NF5286_high_13
[»] chr3 (1 HSPs)
chr3 (11-306)||(42480027-42480320)


Alignment Details
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 11 - 306
Target Start/End: Complemental strand, 42480320 - 42480027
Alignment:
Q  11 cacagacaccttcattcttctacattcttcaaatcaccactacaatctcacagaaacctcatcaatcacaaccatgggttcaacaggtgaaactcaaata 110  Q
    |||| ||||||||||||||| ||||||||||||||||||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||||    
T  42480320 cacacacaccttcattcttccacattcttcaaatcaccactacaatctcaaa--aacctcatcaatcacaaccatgggttcaacaggtgaaactcaaata 42480223  T
Q  111 acaccaactcacatatcagatgaagaagcaaacctcttcgccatgcaactagcaagtgcctcagttcttcccatggttttaaaatcagctcttgaacttg 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42480222 acaccaactcacatatcagatgaagaagcaaacctcttcgccatgcaactagcaagtgcctcagttcttcccatggttttaaaatcagctcttgaacttg 42480123  T
Q  211 atctcttagaaatcattgctaaagctggacctggtgctcaaatttcacctattgaaattgcttctcagctcccaacaactaaccctgaagcaccgg 306  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42480122 atctcttagaaatcattgctaaagctggacctggtgctcaaatttcacctattgaaattgcttctcagctcccaacaactaaccctgaagcaccgg 42480027  T

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