View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5287_low_2 (Length: 373)
Name: NF5287_low_2
Description: NF5287
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5287_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 368
Target Start/End: Original strand, 48123611 - 48123978
Alignment:
| Q |
1 |
tatcaacatcataagcagtataatgcttacaacagctagaaaccttaagcctatcacctttagcacttgcttcatcaccaacttcttgtagtccacggac |
100 |
Q |
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| T |
48123611 |
tatcaacatcataagcagtataatgcttacaacagctagaaaccttaagcctatcacctttagcacttgcttcatcaccaacttcttgtagtccacggac |
48123710 |
T |
|
| Q |
101 |
ataatttacagcatatctagaaacaaccaaaggatcttcccctggagtttcttgtccacgcccccatctcggatcgcgaaaaacattcacattagggctc |
200 |
Q |
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| T |
48123711 |
ataatttacagcatatctagaaacaaccaaaggatcttcccctggagtttcttgtccacgcccccacctcggatcgcgaaaaacattcacattagggctc |
48123810 |
T |
|
| Q |
201 |
caaaatgtcaaaccagccagatccacattgtacatagctctagcttcatttgacacaacttgtcccattgtgtaccataatgtttcattaaaactagcag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48123811 |
caaaatgtcaaaccagccagatccacattgtacatagctctagcttcatttgacacaacttgtcccattgtgtaccataatgtttcattaaaactagcag |
48123910 |
T |
|
| Q |
301 |
ctgatagtatcactgctggaaagctagtagcaccgggtaccctgctatcgaaacgcgtctctgctcct |
368 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
48123911 |
ctgatagtatcactgctggaaagctagtagcaccgggtaccctgctatcgaaacgcgtccctggtcct |
48123978 |
T |
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