View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5288-Insertion-1 (Length: 352)

Name: NF5288-Insertion-1
Description: NF5288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5288-Insertion-1
NF5288-Insertion-1
[»] chr5 (20 HSPs)
chr5 (8-352)||(37704114-37704459)
chr5 (95-344)||(37641332-37641585)
chr5 (95-344)||(37595784-37596037)
chr5 (87-337)||(37698254-37698505)
chr5 (87-344)||(37430211-37430469)
chr5 (87-252)||(37391389-37391554)
chr5 (95-344)||(37713078-37713328)
chr5 (95-344)||(37534560-37534804)
chr5 (93-254)||(37441491-37441650)
chr5 (118-246)||(37380802-37380930)
chr5 (130-252)||(37825460-37825582)
chr5 (8-88)||(37437445-37437525)
chr5 (87-253)||(37437247-37437413)
chr5 (87-219)||(37411754-37411886)
chr5 (8-78)||(37698571-37698641)
chr5 (125-252)||(37399289-37399416)
chr5 (268-344)||(37391584-37391661)
chr5 (269-344)||(37399451-37399527)
chr5 (269-344)||(37825349-37825425)
chr5 (275-344)||(37437155-37437225)
[»] chr3 (2 HSPs)
chr3 (95-252)||(14554606-14554760)
chr3 (275-344)||(14554486-14554556)
[»] chr4 (3 HSPs)
chr4 (95-329)||(24216193-24216428)
chr4 (87-247)||(16841327-16841487)
chr4 (22-88)||(16841203-16841272)


Alignment Details
Target: chr5 (Bit Score: 322; Significance: 0; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 8 - 352
Target Start/End: Complemental strand, 37704459 - 37704114
Alignment:
Q  8 tttggtccttgccccttagtttcaggttatgtttcctatataaatagaggctaatcaattggtatatcctaaatcatcaaaatgcggtccttttttattc 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37704459 tttggtccttgccccttagtttcaggttatgtttcctatataaatagaggctaatcaattggtatatcctaaatcatcaaaatgcggtccttttttattc 37704360  T
Q  108 tattgccttattttacttttcacttgttcttgttattgctgcttactcattttacttcctacactttctcattgtgcagccaacatgatagctccgcctt 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37704359 tattgccttattttacttttcacttgttcttgttattgctgcttactcattttacttcctacactttctcattgtgcagccaacatgatagctccgcctt 37704260  T
Q  208 gttacaattcaaacactcattttctgtcaacacttcatctaaacccggttttctgtctatgtgttcgtctttttcttttaagacagaatcttggaaaacc 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  37704259 gttacaattcaaacactcattttctgtcaacacttcatctaaacccggttttctgtctatgtgtttgtctttttcttttaagacagaatcttggaaaacc 37704160  T
Q  308 ggcaca-attgttgcgagtgggacggtgtcaagtgcgagaccgtgt 352  Q
    |||||| |||||||||||||||| ||||||| |||||| |||||||    
T  37704159 ggcacagattgttgcgagtgggatggtgtcacgtgcgacaccgtgt 37704114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 95 - 344
Target Start/End: Complemental strand, 37641585 - 37641332
Alignment:
Q  95 tccttttttattctattgccttattttacttttcacttgttcttgttattgctgcttactcattttacttcctacactttctcattgtgcagccaacatg 194  Q
    ||||||||||||| ||||||||||||||| |||||||| || ||||| ||| || ||||||||||||||||||||||||||||| |||||| ||||||||    
T  37641585 tccttttttattccattgccttattttacctttcacttcttgttgttgttgttgattactcattttacttcctacactttctcactgtgcaaccaacatg 37641486  T
Q  195 atagctccgccttgttacaattcaaacactcattttctgtcaacacttcatctaaacc---cggttttctgtctatgtgttcgtctttttcttttaagac 291  Q
    | | ||| |||||||||||||||||| |||| ||||||||||||||||||||||||||   || | || ||||||  ||| | ||||||||||| |||||    
T  37641485 acacctctgccttgttacaattcaaaaactctttttctgtcaacacttcatctaaaccggacgatattttgtctagttgtccctctttttctttcaagac 37641386  T
Q  292 agaatcttggaaaaccggcaca-attgttgcgagtgggacggtgtcaagtgcga 344  Q
    |||||||||||||| |   ||| ||||||| |||||||| ||||||| ||||||    
T  37641385 agaatcttggaaaaacaatacagattgttgtgagtgggatggtgtcacgtgcga 37641332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 95 - 344
Target Start/End: Complemental strand, 37596037 - 37595784
Alignment:
Q  95 tccttttttattctattgccttattttacttttcacttgttcttgttattg---ctgcttactcattttacttcctacactttctcattgtgcagccaac 191  Q
    ||||||||||||| ||||||||||||||| |||||||| |||||||| |||   |||||||||||||||||||||||||||||||||||||||| | |||    
T  37596037 tccttttttattccattgccttattttacctttcactttttcttgttgttgttgctgcttactcattttacttcctacactttctcattgtgcaacaaac 37595938  T
Q  192 atgatagctccgccttgttacaattcaaacactcattttctgtcaacacttcatctaaacccggttttctgt-ctatg--tgttcgtctttttcttttaa 288  Q
    |||| | ||| |||||||||||||||||| |||| ||||||||||||||||||||| |||||     || || || ||  ||||| ||||||||||| ||    
T  37595937 atgacaactctgccttgttacaattcaaaaactctttttctgtcaacacttcatctcaaccc---aatccgtactttggttgttcctctttttctttcaa 37595841  T
Q  289 gacagaatcttggaaaaccggcaca-attgttgcgagtgggacggtgtcaagtgcga 344  Q
    ||||||||||||| ||| | | ||| ||||||| |||||||| ||||||| ||||||    
T  37595840 gacagaatcttgggaaaacagtacagattgttgtgagtgggatggtgtcacgtgcga 37595784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 87 - 337
Target Start/End: Complemental strand, 37698505 - 37698254
Alignment:
Q  87 aaatgcggtccttttttattctattgccttattttacttttcacttgttcttgttattgctgcttactcattttacttcctacactttctcattgtgcag 186  Q
    ||||| ||||||||||||||||||||||||||||| | |||||||| |||||||| ||| |||||||||||||||||||||||||  ||||||| ||||     
T  37698505 aaatggggtccttttttattctattgccttattttgcctttcactttttcttgttgttgttgcttactcattttacttcctacacactctcattatgcaa 37698406  T
Q  187 ccaacatgatagctccgccttgttacaattcaaacactcattttctgtcaacacttcatctaaacccggttttctgtctatgtgttcgtctttttctttt 286  Q
    ||| ||||| || || |||||||||||||||||| |||||||||| || |||||||| ||| |||| | | ||  |||||  ||||| ||||||||||      
T  37698405 ccatcatgacagttctgccttgttacaattcaaaaactcattttcagttaacacttcgtctcaacctgatatttggtctagatgttcctctttttcttcc 37698306  T
Q  287 aagacagaatcttggaaaaccggcaca-attgttgcgagtgggacggtgtca 337  Q
    | ||||||||||||||||| |   ||| |||||||| ||||||| |||||||    
T  37698305 aggacagaatcttggaaaaacaatacagattgttgcaagtgggatggtgtca 37698254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 87 - 344
Target Start/End: Complemental strand, 37430469 - 37430211
Alignment:
Q  87 aaatgcggtccttttttattctattgccttattttacttttcacttgttcttgttattgctgcttactcattttacttcctacactttctcattgtgcag 186  Q
    ||||| ||||||||| | ||||||| |||||| || | |||||||||||||||||  ||||||| |||| |||||||||||| || || ||| ||||||     
T  37430469 aaatggggtccttttgttttctatttccttatcttgcctttcacttgttcttgttgatgctgctaactctttttacttcctatacattttcaatgtgcaa 37430370  T
Q  187 ccaacatgatagctccgccttgttacaattcaaacactcattttctgtcaacacttcatctaaacccggttttctgtctatgtgttcgtctttttctttt 286  Q
     || ||||| || || |||||||||||||||||  | ||||||| | |||||||||||||| |||| ||||||  ||||   ||||| |||||||||||     
T  37430369 gcatcatgacagttctgccttgttacaattcaagaattcattttttatcaacacttcatctcaacctggtttttggtctcactgttcctctttttctttc 37430270  T
Q  287 aagacagaatcttggaaaaccggcaca-attgttgcgagtgggacggtgtcaagtgcga 344  Q
    ||||||||||||||||||||||||||| |||| ||||||||||| ||||||| ||||||    
T  37430269 aagacagaatcttggaaaaccggcacagattgctgcgagtgggatggtgtcacgtgcga 37430211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 87 - 252
Target Start/End: Original strand, 37391389 - 37391554
Alignment:
Q  87 aaatgcggtccttttttattctattgccttattttacttttcacttgttcttgttattgctgcttactcattttacttcctacactttctcattgtgcag 186  Q
    ||||| ||||||| |||||| |||||||||||||||| |||||||||||| |||| ||| |||||||||||||||||||||| ||| ||||||||||||     
T  37391389 aaatggggtccttgtttattttattgccttattttacctttcacttgttcatgttgttgttgcttactcattttacttcctatactctctcattgtgcaa 37391488  T
Q  187 ccaacatgatagctccgccttgttacaattcaaacactcattttctgtcaacacttcatctaaacc 252  Q
    ||  ||||||||||| |||||| ||||||||||| ||||||||| ||||||||||||||| |||||    
T  37391489 ccttcatgatagctctgccttgctacaattcaaaaactcattttttgtcaacacttcatcaaaacc 37391554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 95 - 344
Target Start/End: Complemental strand, 37713328 - 37713078
Alignment:
Q  95 tccttttttattctattgccttattttacttttcacttgttcttgttattgctgcttactcattttacttcctacactttctcattgtgcagccaacatg 194  Q
    ||||||||||||| ||||||||||||||| |||||||| |||| ||| ||| |||||||||||||||||||| ||||||||||| |||||| | ||||||    
T  37713328 tccttttttattccattgccttattttacctttcacttcttctcgttgttgttgcttactcattttacttcccacactttctcactgtgcaacaaacatg 37713229  T
Q  195 atagctccgccttgttacaattcaaacactcattttctgtcaacacttcatctaaacccggttttctgt-ctatg--tgttcgtctttttcttttaagac 291  Q
    | | ||| |||||||||||||||||| |||| ||||||||||||||||||||| |||||     || || || ||  ||||| ||||||||||| |||||    
T  37713228 acaactctgccttgttacaattcaaaaactctttttctgtcaacacttcatctcaaccc---aatccgtactttggttgttcctctttttctttcaagac 37713132  T
Q  292 agaatcttggaaaaccggcaca-attgttgcgagtgggacggtgtcaagtgcga 344  Q
    |||||||||| ||| | | ||| ||||||| |||||||| ||||||| ||||||    
T  37713131 agaatcttggcaaaacagtacagattgttgtgagtgggatggtgtcacgtgcga 37713078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 95 - 344
Target Start/End: Complemental strand, 37534804 - 37534560
Alignment:
Q  95 tccttttttattctattgccttattttacttttcacttgttcttgttattgctgcttactcattttacttcctacactttctcattgtgcagccaacatg 194  Q
    ||||||||||||| ||||||||||||||| |||||||| |||||||| ||| || ||||||||||||||||||||||||||||| |||||| | ||||||    
T  37534804 tccttttttattccattgccttattttacctttcactttttcttgttgttgttgattactcattttacttcctacactttctcactgtgcaacaaacatg 37534705  T
Q  195 atagctccgccttgttacaattcaaacactcattttctgtcaacacttcatctaaacccggttttctgtctatgtgttcgtctttttcttttaagacaga 294  Q
    | | ||| |||||||||||||||||| |||| |||||||||| |||||||||| ||| |  |||      |  | |||| ||||||||||| ||||||||    
T  37534704 acaactctgccttgttacaattcaaaaactctttttctgtcagcacttcatctcaactctattt------tgcgcgttcttctttttctttcaagacaga 37534611  T
Q  295 atcttggaaaaccggcaca-attgttgcgagtgggacggtgtcaagtgcga 344  Q
    ||||||| ||| | | ||| ||||||| |||||||| ||||||| ||||||    
T  37534610 atcttgggaaaacagtacagattgttgtgagtgggatggtgtcacgtgcga 37534560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 93 - 254
Target Start/End: Complemental strand, 37441650 - 37441491
Alignment:
Q  93 ggtccttttttattctattgccttattttacttttcacttgttcttgttattgctgcttactcattttacttcctacactttctcattgtgcagccaaca 192  Q
    |||||||||||||| |||||||||||||||| |||||| ||||||| || |||||||||||||||||||||||||| ||||||||| |||| | | ||||    
T  37441650 ggtccttttttattttattgccttattttacctttcacatgttcttcttgttgctgcttactcattttacttcctatactttctcactgtgaaacaaaca 37441551  T
Q  193 tgatagctccgccttgttacaattcaaacactcattttctgtcaacacttcatctaaacccg 254  Q
    ||| | ||| |||||||||||||||||| ||||  |||| |||||||||||||| |||||||    
T  37441550 tgacacctctgccttgttacaattcaaaaactc--tttcagtcaacacttcatcgaaacccg 37441491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 118 - 246
Target Start/End: Original strand, 37380802 - 37380930
Alignment:
Q  118 ttttacttttcacttgttcttgttattgctgcttactcattttacttcctacactttctcattgtgcagccaacatgatagctccgccttgttacaattc 217  Q
    |||||| ||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||| |||||||||||  || ||||||||||| |||    
T  37380802 ttttacctttcacttgttcttgttgttgttgcttactcattttacttcccacactttctcattgtgcaaccaacatgatacatctgccttgttacatttc 37380901  T
Q  218 aaacactcattttctgtcaacacttcatc 246  Q
    ||| ||||||||||| |||||||||||||    
T  37380902 aaaaactcattttctttcaacacttcatc 37380930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 130 - 252
Target Start/End: Complemental strand, 37825582 - 37825460
Alignment:
Q  130 cttgttcttgttattgctgcttactcattttacttcctacactttctcattgtgcagccaacatgatagctccgccttgttacaattcaaacactcattt 229  Q
    |||||||||||| ||| || ||||||||||||||||||||||||||||| |||||| | ||||||| | ||| |||||||||||||||||| |||| |||    
T  37825582 cttgttcttgttgttgttgattactcattttacttcctacactttctcactgtgcaacaaacatgacaactctgccttgttacaattcaaaaactctttt 37825483  T
Q  230 tctgtcaacacttcatctaaacc 252  Q
    |||||||||||||||||||||||    
T  37825482 tctgtcaacacttcatctaaacc 37825460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 8 - 88
Target Start/End: Complemental strand, 37437525 - 37437445
Alignment:
Q  8 tttggtccttgccccttagtttcaggttatgtttcctatataaatagaggctaatcaattggtatatcctaaatcatcaaa 88  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  37437525 tttggtccttgccccttagtttcaagttatgtttcctatataaatagaggctaatcatttggtatatcctaaatcatcaaa 37437445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 87 - 253
Target Start/End: Complemental strand, 37437413 - 37437247
Alignment:
Q  87 aaatgcggtccttttttattctattgccttattttacttttcacttgttcttgttattgctgcttactcattttacttcctacactttctcattgtgcag 186  Q
    ||||| |||||||||||||||| ||||||| |||| |  |||||||||||| ||| ||| |||||||||| |||||| || ||||||||||||| ||||     
T  37437413 aaatggggtccttttttattcttttgccttgttttgcccttcacttgttctcgttgttgttgcttactcactttactacccacactttctcattatgcaa 37437314  T
Q  187 ccaacatgatagctccgccttgttacaattcaaacactcattttctgtcaacacttcatctaaaccc 253  Q
    ||| ||||| | ||| ||||| |||||||||||| |||| |||  | |||||||||||||| |||||    
T  37437313 ccatcatgacacctctgccttattacaattcaaaaactcttttcttctcaacacttcatctcaaccc 37437247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 87 - 219
Target Start/End: Original strand, 37411754 - 37411886
Alignment:
Q  87 aaatgcggtccttttttattctattgccttattttacttttcacttgttcttgttattgctgcttactcattttacttcctacactttctcattgtgcag 186  Q
    ||||| |||||| |||| |||||||| | |||||||| |||||||||||||||||  ||||| |||||||||||||||||||||| |||||||| ||||     
T  37411754 aaatggggtcctgttttgttctattgtcctattttacctttcacttgttcttgttgctgctgtttactcattttacttcctacaccttctcattatgcaa 37411853  T
Q  187 ccaacatgatagctccgccttgttacaattcaa 219  Q
    | | ||||| ||||  |||||||||||||||||    
T  37411854 ctatcatgacagctttgccttgttacaattcaa 37411886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 8 - 78
Target Start/End: Complemental strand, 37698641 - 37698571
Alignment:
Q  8 tttggtccttgccccttagtttcaggttatgtttcctatataaatagaggctaatcaattggtatatccta 78  Q
    |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37698641 tttggtcctttccccgtagtttcaggttatgtttcctatataaatagaggctaatcaattggtatatccta 37698571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 125 - 252
Target Start/End: Original strand, 37399289 - 37399416
Alignment:
Q  125 tttcacttgttcttgttattgctgcttactcattttacttcctacactttctcattgtgcagccaacatgatagctccgccttgttacaattcaaacact 224  Q
    ||||||||||||||||| ||| || |||||||||||||||| |||||||||||| | |||| ||| ||||| | ||| |||||||||||||||||| | |    
T  37399289 tttcacttgttcttgttgttgttgattactcattttacttcatacactttctcactatgcaaccatcatgacacctctgccttgttacaattcaaaaatt 37399388  T
Q  225 cattttctgtcaacacttcatctaaacc 252  Q
    |||||| |||  |||||||||| |||||    
T  37399389 cattttttgttgacacttcatcaaaacc 37399416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 268 - 344
Target Start/End: Original strand, 37391584 - 37391661
Alignment:
Q  268 gtgttcgtctttttcttttaagacagaatcttggaaaaccggcac-aattgttgcgagtgggacggtgtcaagtgcga 344  Q
    |||||| ||||||||||| ||||||||||||||||||| | | || ||||||||| ||||||| ||||||| ||||||    
T  37391584 gtgttcctctttttctttcaagacagaatcttggaaaaacagtacaaattgttgcaagtgggatggtgtcacgtgcga 37391661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 269 - 344
Target Start/End: Original strand, 37399451 - 37399527
Alignment:
Q  269 tgttcgtctttttcttttaagacagaatcttggaaaaccggcaca-attgttgcgagtgggacggtgtcaagtgcga 344  Q
    ||||| ||||||||||| ||||||||||||||| ||| | | ||| ||||||| |||||||| ||||||| ||||||    
T  37399451 tgttcctctttttctttcaagacagaatcttgggaaaacagtacagattgttgtgagtgggatggtgtcacgtgcga 37399527  T

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Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 269 - 344
Target Start/End: Complemental strand, 37825425 - 37825349
Alignment:
Q  269 tgttcgtctttttcttttaagacagaatcttggaaaaccggcaca-attgttgcgagtgggacggtgtcaagtgcga 344  Q
    ||||| ||||||||||| ||||||||||||||| ||| | | ||| ||||||| |||||||| ||||||| ||||||    
T  37825425 tgttcctctttttctttcaagacagaatcttgggaaaacagtacagattgttgtgagtgggatggtgtcacgtgcga 37825349  T

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Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 344
Target Start/End: Complemental strand, 37437225 - 37437155
Alignment:
Q  275 tctttttcttttaagacagaatcttggaaaaccggcaca-attgttgcgagtgggacggtgtcaagtgcga 344  Q
    ||||||||||| ||||||||||||||| ||| | | ||| ||||||| |||||||| ||||||| ||||||    
T  37437225 tctttttctttcaagacagaatcttgggaaaacagtacagattgttgtgagtgggatggtgtcacgtgcga 37437155  T

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Target: chr3 (Bit Score: 96; Significance: 5e-47; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 95 - 252
Target Start/End: Complemental strand, 14554760 - 14554606
Alignment:
Q  95 tccttttttattctattgccttattttacttttcacttgttcttgttattgctgcttactcattttacttcctacactttctcattgtgcagccaacatg 194  Q
    ||||||||||||||||||||||||||||| |||||||| |||||   |||| |||||||||||||||||||||| |||||||||||||||| ||||||||    
T  14554760 tccttttttattctattgccttattttacctttcactttttctt---attgttgcttactcattttacttcctatactttctcattgtgcaaccaacatg 14554664  T
Q  195 atagctccgccttgttacaattcaaacactcattttctgtcaacacttcatctaaacc 252  Q
    | | ||| |||||||||||||||||| |||| ||||||||||||||||| || |||||    
T  14554663 acacctctgccttgttacaattcaaaaactctttttctgtcaacacttcttcgaaacc 14554606  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 275 - 344
Target Start/End: Complemental strand, 14554556 - 14554486
Alignment:
Q  275 tctttttcttttaagacagaatcttggaaaaccggcaca-attgttgcgagtgggacggtgtcaagtgcga 344  Q
    ||||||||||| |||||||||||||||||||   | ||| |||||||||||||||| ||||||| ||||||    
T  14554556 tctttttctttcaagacagaatcttggaaaaagagtacagattgttgcgagtgggatggtgtcacgtgcga 14554486  T

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Target: chr4 (Bit Score: 84; Significance: 7e-40; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 95 - 329
Target Start/End: Original strand, 24216193 - 24216428
Alignment:
Q  95 tccttttttattctattgccttattttacttttcacttgttcttgttattgctgcttactcattttacttcctacactttctcattgtgcagccaacatg 194  Q
    ||||||||||||||| ||||| |||| || |||||||||||| |||| ||| ||||||||||||||||||| ||||||| |||||| |||| ||| ||||    
T  24216193 tccttttttattctaatgcctcatttgacctttcacttgttcatgttgttgttgcttactcattttacttcttacacttactcattctgcaaccatcatg 24216292  T
Q  195 atagctccgccttgttacaattcaaacactcattttctgtcaacacttcatctaaacccggttttctgtctatgtgttcgtctttttcttttaagacaga 294  Q
    | || || || ||||||||||||||  ||||||||  |||||||||||||||| |||||| | ||  ||||||||||||  |||||| ||| | ||| ||    
T  24216293 acagttctgcattgttacaattcaagaactcatttgttgtcaacacttcatctgaacccgatatttggtctatgtgttccactttttatttcaggacgga 24216392  T
Q  295 atcttggaaaaccggcaca-attgttgcgagtggga 329  Q
    ||| |||||||  ||  || ||||||||||||||||    
T  24216393 atcctggaaaaatggtgcagattgttgcgagtggga 24216428  T

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Target: chr4; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 87 - 247
Target Start/End: Original strand, 16841327 - 16841487
Alignment:
Q  87 aaatgcggtccttttttattctattgccttattttacttttcacttgttcttgttattgctgcttactcattttacttcctacactttctcattgtgcag 186  Q
    ||||| |||||||||||||| | ||||||| |||| |  |||||||||||||  |  ||||||||||||| ||||||||  ||||||| ||||| ||||     
T  16841327 aaatggggtccttttttattgttttgccttgttttgcccttcacttgttctttgtgctgctgcttactcactttacttcacacactttgtcattctgcaa 16841426  T
Q  187 ccaacatgatagctccgccttgttacaattcaaacactcattttctgtcaacacttcatct 247  Q
    ||||||||| ||||| || |||||||| |||||| ||||||||||||||||||||||||||    
T  16841427 ccaacatgacagctctgctttgttacatttcaaaaactcattttctgtcaacacttcatct 16841487  T

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Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 22 - 88
Target Start/End: Original strand, 16841203 - 16841272
Alignment:
Q  22 cttagtttcaggttatgtttcctatataaata---gaggctaatcaattggtatatcctaaatcatcaaa 88  Q
    ||||||||||||||||||||||||||||||||   ||||||||||| |||||||||| ||||||||||||    
T  16841203 cttagtttcaggttatgtttcctatataaatagaggaggctaatcagttggtatatcgtaaatcatcaaa 16841272  T

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