View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5288_high_1 (Length: 229)
Name: NF5288_high_1
Description: NF5288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5288_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 19 - 213
Target Start/End: Original strand, 48584919 - 48585113
Alignment:
| Q |
19 |
ccctctctcatttgtttcctccaaaaaatcatcaggcaaaacaccaggattgcttaatgaccacaaaaacgagacttgagaattcaataacccgtataca |
118 |
Q |
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| T |
48584919 |
ccctctctcatttgtttcctccaaaaaatcatcaggcaaaacaccaggattgcttaatgaccacaaaaacgagacttgagaattcaataacccgtataca |
48585018 |
T |
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| Q |
119 |
atttcattcatttgttcttgaggatagtttactagagtcccgaaagagacgtaaactacggaatcttttggctttgtgtctagccactcgatgat |
213 |
Q |
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| T |
48585019 |
atttcattcatttgttcttgaggatagtttactagagtcccgaaagagacgtaaactacggaatcttttggctttgtgtctagccactctatgat |
48585113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 79 - 207
Target Start/End: Original strand, 48661201 - 48661329
Alignment:
| Q |
79 |
ccacaaaaacgagacttgagaattcaataacccgtatacaatttcattcatttgttcttgaggatagtttactagagtcccgaaagagacgtaaactacg |
178 |
Q |
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| T |
48661201 |
ccacaaaaacgagacttgagaattcaataacccatatgcaatttcgttaacttgttcttgagtatgattcacaatagtcccaaaagaaatataaactaca |
48661300 |
T |
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| Q |
179 |
gaatcttttggctttgtgtctagccactc |
207 |
Q |
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| T |
48661301 |
gaaccttttggctttgtgtttagccactc |
48661329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 79 - 207
Target Start/End: Original strand, 11546889 - 11547017
Alignment:
| Q |
79 |
ccacaaaaacgagacttgagaattcaataacccgtatacaatttcattcatttgttcttgaggatagtttactagagtcccgaaagagacgtaaactacg |
178 |
Q |
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| T |
11546889 |
ccacaaaaatgatacttgagaatctaataacccatatgctatttcattcacttgttcttgtggaaggtacacaatagtcccaaaagaaatataaaccaca |
11546988 |
T |
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| Q |
179 |
gaatcttttggctttgtgtctagccactc |
207 |
Q |
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| T |
11546989 |
gaatcttttggctttgtgtttagccactc |
11547017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 79 - 207
Target Start/End: Complemental strand, 48618677 - 48618549
Alignment:
| Q |
79 |
ccacaaaaacgagacttgagaattcaataacccgtatacaatttcattcatttgttcttgaggatagtttactagagtcccgaaagagacgtaaactacg |
178 |
Q |
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| T |
48618677 |
ccacaaaaacgatacttgagaatccaataacccatatgcaatttcattcacttgttcttgtggaatgtacacaatagacccaaaagaaatataaaccaca |
48618578 |
T |
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| Q |
179 |
gaatcttttggctttgtgtctagccactc |
207 |
Q |
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||| |||||||||||||| ||||||||| |
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| T |
48618577 |
gaaccttttggctttgtgcttagccactc |
48618549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 79 - 142
Target Start/End: Original strand, 48652778 - 48652841
Alignment:
| Q |
79 |
ccacaaaaacgagacttgagaattcaataacccgtatacaatttcattcatttgttcttgagga |
142 |
Q |
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| T |
48652778 |
ccacaaaaacgatacttgagaatccaataacccatatgctatttcattcacttgttcttgagga |
48652841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 91 - 207
Target Start/End: Original strand, 48656238 - 48656354
Alignment:
| Q |
91 |
gacttgagaattcaataacccgtatacaatttcattcatttgttcttgaggatagtt-tactagagtcccgaaagagacgtaaactacggaatcttttgg |
189 |
Q |
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| T |
48656238 |
gacttgagaattcaataacccatatgcaatttcattcacttgttctggagga-agttgcacaatagtcccaaaggaaacataaaccacagaaccttttgg |
48656336 |
T |
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| Q |
190 |
ctttgtgtctagccactc |
207 |
Q |
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| T |
48656337 |
ctttgagtttagccactc |
48656354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 79 - 142
Target Start/End: Original strand, 27227825 - 27227888
Alignment:
| Q |
79 |
ccacaaaaacgagacttgagaattcaataacccgtatacaatttcattcatttgttcttgagga |
142 |
Q |
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| T |
27227825 |
ccacaaaaaggagacttgagaatccaataatccataggcaatttcattcacttgttcttgagga |
27227888 |
T |
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