View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5288_high_12 (Length: 358)

Name: NF5288_high_12
Description: NF5288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5288_high_12
NF5288_high_12
[»] chr7 (15 HSPs)
chr7 (1-351)||(46973717-46974067)
chr7 (287-334)||(29653639-29653686)
chr7 (281-333)||(41461242-41461294)
chr7 (282-341)||(45601611-45601670)
chr7 (282-334)||(1569158-1569210)
chr7 (289-341)||(12966151-12966203)
chr7 (282-330)||(24549776-24549824)
chr7 (282-341)||(21517468-21517527)
chr7 (282-341)||(28628021-28628080)
chr7 (276-322)||(30144929-30144975)
chr7 (287-341)||(38135306-38135360)
chr7 (282-340)||(43281967-43282025)
chr7 (289-334)||(22174142-22174187)
chr7 (281-334)||(28858187-28858240)
chr7 (282-334)||(30664710-30664762)
[»] chr1 (11 HSPs)
chr1 (281-341)||(8342968-8343028)
chr1 (287-341)||(3818949-3819003)
chr1 (287-341)||(8203227-8203281)
chr1 (287-341)||(19969305-19969359)
chr1 (281-341)||(6025740-6025800)
chr1 (281-341)||(30834064-30834124)
chr1 (282-341)||(40416506-40416565)
chr1 (281-339)||(42501245-42501303)
chr1 (281-322)||(12135861-12135902)
chr1 (281-334)||(12231507-12231560)
chr1 (289-333)||(8796352-8796396)
[»] chr8 (13 HSPs)
chr8 (280-341)||(4011218-4011279)
chr8 (282-341)||(35643694-35643753)
chr8 (281-341)||(23023360-23023420)
chr8 (281-341)||(38178347-38178407)
chr8 (282-334)||(39967587-39967639)
chr8 (282-341)||(38391981-38392040)
chr8 (288-334)||(79169-79215)
chr8 (287-341)||(16351513-16351567)
chr8 (287-341)||(17491747-17491801)
chr8 (282-327)||(16705896-16705941)
chr8 (289-341)||(9904977-9905029)
chr8 (281-341)||(10079994-10080054)
chr8 (281-340)||(39388918-39388978)
[»] chr3 (9 HSPs)
chr3 (281-334)||(46431766-46431819)
chr3 (287-339)||(36820070-36820122)
chr3 (287-341)||(2340810-2340864)
chr3 (281-341)||(43308697-43308757)
chr3 (282-341)||(19676169-19676228)
chr3 (281-340)||(37598257-37598315)
chr3 (282-341)||(39600769-39600828)
chr3 (287-341)||(11581579-11581633)
chr3 (280-334)||(41452826-41452880)
[»] chr2 (14 HSPs)
chr2 (282-341)||(9556457-9556516)
chr2 (276-331)||(43832243-43832298)
chr2 (287-341)||(26784433-26784487)
chr2 (287-341)||(33287556-33287610)
chr2 (289-341)||(19235079-19235131)
chr2 (287-335)||(31254429-31254477)
chr2 (290-342)||(38435086-38435138)
chr2 (288-331)||(23915787-23915830)
chr2 (287-325)||(1626346-1626384)
chr2 (287-341)||(12026098-12026152)
chr2 (287-342)||(33625291-33625350)
chr2 (281-347)||(42092646-42092712)
chr2 (294-339)||(33504360-33504405)
chr2 (281-325)||(19024329-19024373)
[»] scaffold0018 (1 HSPs)
scaffold0018 (287-341)||(178513-178567)
[»] chr4 (20 HSPs)
chr4 (287-341)||(10209171-10209225)
chr4 (281-334)||(42639107-42639160)
chr4 (281-334)||(54470349-54470402)
chr4 (281-341)||(47147508-47147568)
chr4 (282-342)||(50680874-50680934)
chr4 (287-342)||(31961359-31961414)
chr4 (291-342)||(37488225-37488276)
chr4 (281-332)||(47372795-47372846)
chr4 (287-325)||(7544616-7544654)
chr4 (287-341)||(7682003-7682057)
chr4 (282-332)||(26024938-26024988)
chr4 (287-333)||(42293358-42293404)
chr4 (281-334)||(934518-934571)
chr4 (281-330)||(20047581-20047630)
chr4 (292-341)||(25967359-25967408)
chr4 (289-334)||(53517672-53517717)
chr4 (282-322)||(26025007-26025047)
chr4 (287-339)||(34233117-34233169)
chr4 (281-325)||(37042751-37042795)
chr4 (281-325)||(45569096-45569140)
[»] scaffold0325 (1 HSPs)
scaffold0325 (285-334)||(11939-11988)
[»] chr6 (5 HSPs)
chr6 (281-341)||(33997631-33997691)
chr6 (282-341)||(34593-34652)
chr6 (282-325)||(43140-43183)
chr6 (287-339)||(10617327-10617379)
chr6 (282-334)||(31831947-31831999)
[»] chr5 (11 HSPs)
chr5 (287-341)||(2713079-2713133)
chr5 (287-341)||(10082838-10082892)
chr5 (287-341)||(12576953-12577007)
chr5 (287-341)||(27998576-27998630)
chr5 (280-341)||(2066132-2066193)
chr5 (281-334)||(5303586-5303639)
chr5 (282-334)||(14667913-14667965)
chr5 (281-341)||(14749442-14749502)
chr5 (281-325)||(28186862-28186906)
chr5 (281-341)||(38684615-38684675)
chr5 (282-334)||(43475382-43475433)


Alignment Details
Target: chr7 (Bit Score: 318; Significance: 1e-179; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 46974067 - 46973717
Alignment:
Q  1 taaacaagtgttgtggaagttcctaaatggcactgtcctattcaaccaatgttactgttttggtaaagtatcgtgtaatcatacttgaccacttttaata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46974067 taaacaagtgttgtggaagttcctaaatggcactgtcctattcaaccaatgttactgttttggtaaagtatcgtgtaatcatacttgaccacttttaata 46973968  T
Q  101 aaacaccatgatatgagtttatgacaacttgaataaacatacatttaaatgtagcatcaccatttgagaaccaaggtcatgcaagtccgacactattatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  46973967 aaacaccatgatatgagtttatgacaacttgaataaacatacattcaaatgtagcatcaccatttgagaaccaagttcatgcaagtccgacactattatt 46973868  T
Q  201 attattaaatacacaatctgctannnnnnngccaagttaaaatcaagcttgaagaaaactatacgacagcaatcaatccttatcccactcattaatctct 300  Q
    |||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46973867 attattaaatacacaatctgctatttttttgccaagttaaaatcaagcttgaagaaaactatacgacagcaatcaatccttatcccactcattaatctct 46973768  T
Q  301 agatgtttattaatagtttctcttacagtttttcaaggtctatctgtggtg 351  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  46973767 agatgtttattaatagtttctcttacagtttttcaaggtctatctctggtg 46973717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 287 - 334
Target Start/End: Original strand, 29653639 - 29653686
Alignment:
Q  287 actcattaatctctagatgtttattaatagtttctcttacagtttttc 334  Q
    |||||||||||||||||| ||| |||||||||||||||||||||||||    
T  29653639 actcattaatctctagatctttcttaatagtttctcttacagtttttc 29653686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 281 - 333
Target Start/End: Complemental strand, 41461294 - 41461242
Alignment:
Q  281 tatcccactcattaatctctagatgtttattaatagtttctcttacagttttt 333  Q
    ||||| ||||||||||| |||||| |||||||||||||||||||| |||||||    
T  41461294 tatccaactcattaatcactagatctttattaatagtttctcttatagttttt 41461242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 282 - 341
Target Start/End: Complemental strand, 45601670 - 45601611
Alignment:
Q  282 atcccactcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 341  Q
    |||| |||||||||||||||||| ||| ||||| |||||||||| |||||||| ||||||    
T  45601670 atccaactcattaatctctagatctttcttaatggtttctcttatagtttttctaggtct 45601611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 334
Target Start/End: Complemental strand, 1569210 - 1569158
Alignment:
Q  282 atcccactcattaatctctagatgtttattaatagtttctcttacagtttttc 334  Q
    |||| |||||||||||||||||| ||| ||||||||| |||||| ||||||||    
T  1569210 atccaactcattaatctctagatctttcttaatagttactcttatagtttttc 1569158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 289 - 341
Target Start/End: Complemental strand, 12966203 - 12966151
Alignment:
Q  289 tcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 341  Q
    ||||||||||||| || ||| |||||||||||||||| |||||||| ||||||    
T  12966203 tcattaatctctaaatatttcttaatagtttctcttatagtttttctaggtct 12966151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 330
Target Start/End: Original strand, 24549776 - 24549824
Alignment:
Q  282 atcccactcattaatctctagatgtttattaatagtttctcttacagtt 330  Q
    |||| |||||||||||||||||| ||| |||||||||||||||| ||||    
T  24549776 atccaactcattaatctctagatctttcttaatagtttctcttatagtt 24549824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 282 - 341
Target Start/End: Original strand, 21517468 - 21517527
Alignment:
Q  282 atcccactcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 341  Q
    |||| ||| ||||||||||| || ||| |||||||||||||||| |||||||| ||||||    
T  21517468 atccaacttattaatctctaaatattttttaatagtttctcttatagtttttctaggtct 21517527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 282 - 341
Target Start/End: Original strand, 28628021 - 28628080
Alignment:
Q  282 atcccactcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 341  Q
    |||| ||||||||||||||| || |||  ||||||||||||||| |||||||| ||||||    
T  28628021 atccaactcattaatctctaaatctttcctaatagtttctcttatagtttttctaggtct 28628080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 276 - 322
Target Start/End: Complemental strand, 30144975 - 30144929
Alignment:
Q  276 atccttatcccactcattaatctctagatgtttattaatagtttctc 322  Q
    |||| ||||| |||||||||||||||||| ||| |||||||||||||    
T  30144975 atccctatccaactcattaatctctagatctttcttaatagtttctc 30144929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 341
Target Start/End: Original strand, 38135306 - 38135360
Alignment:
Q  287 actcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 341  Q
    ||||||||||||||| || ||| |||||||||||||||| | |||||| ||||||    
T  38135306 actcattaatctctaaatcttttttaatagtttctcttatactttttctaggtct 38135360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 340
Target Start/End: Complemental strand, 43282025 - 43281967
Alignment:
Q  282 atcccactcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtc 340  Q
    |||| |||||||||||||||||| ||  ||||| ||||||||||| ||||||| |||||    
T  43282025 atccaactcattaatctctagatcttacttaattgtttctcttacggtttttctaggtc 43281967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 334
Target Start/End: Complemental strand, 22174187 - 22174142
Alignment:
Q  289 tcattaatctctagatgtttattaatagtttctcttacagtttttc 334  Q
    |||||||||||||||| ||| || ||||||||||||| ||||||||    
T  22174187 tcattaatctctagatctttgtttatagtttctcttatagtttttc 22174142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 334
Target Start/End: Complemental strand, 28858240 - 28858187
Alignment:
Q  281 tatcccactcattaatctctagatgtttattaatagtttctcttacagtttttc 334  Q
    ||||| ||| |||||||||||||| ||| |||||||||| ||||| ||||||||    
T  28858240 tatccaacttattaatctctagatctttcttaatagtttgtcttatagtttttc 28858187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 334
Target Start/End: Complemental strand, 30664762 - 30664710
Alignment:
Q  282 atcccactcattaatctctagatgtttattaatagtttctcttacagtttttc 334  Q
    |||| |||||||||||||||||| ||| |||||||||||| ||| ||| ||||    
T  30664762 atccaactcattaatctctagatctttcttaatagtttcttttatagtctttc 30664710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 281 - 341
Target Start/End: Original strand, 8342968 - 8343028
Alignment:
Q  281 tatcccactcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 341  Q
    ||||| |||||||||||||||||| ||||||||| |||||||||| |||||||| ||||||    
T  8342968 tatccaactcattaatctctagatctttattaattgtttctcttatagtttttctaggtct 8343028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 287 - 341
Target Start/End: Original strand, 3818949 - 3819003
Alignment:
Q  287 actcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 341  Q
    ||||||||||||||| || ||| |||||||||||||||| |||||||||||||||    
T  3818949 actcattaatctctaaatctttcttaatagtttctcttatagtttttcaaggtct 3819003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 287 - 341
Target Start/End: Original strand, 8203227 - 8203281
Alignment:
Q  287 actcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 341  Q
    |||||||||||||||||| ||| |||||||||||||||| |||||||| ||||||    
T  8203227 actcattaatctctagatcttttttaatagtttctcttatagtttttctaggtct 8203281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 287 - 341
Target Start/End: Original strand, 19969305 - 19969359
Alignment:
Q  287 actcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 341  Q
    |||||||||||||||||| ||| |||||||||||||||| |||||||| ||||||    
T  19969305 actcattaatctctagatctttgttaatagtttctcttatagtttttctaggtct 19969359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 341
Target Start/End: Complemental strand, 6025800 - 6025740
Alignment:
Q  281 tatcccactcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 341  Q
    ||||| |||||||||||||||||| ||| ||| |||| ||||||| |||||||| ||||||    
T  6025800 tatccaactcattaatctctagatcttttttactagtatctcttatagtttttctaggtct 6025740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 341
Target Start/End: Original strand, 30834064 - 30834124
Alignment:
Q  281 tatcccactcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 341  Q
    ||||| |||||||||||||||||| |||  ||||||||||||||| || ||||| ||||||    
T  30834064 tatccaactcattaatctctagatctttcgtaatagtttctcttatagcttttctaggtct 30834124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 282 - 341
Target Start/End: Complemental strand, 40416565 - 40416506
Alignment:
Q  282 atcccactcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 341  Q
    |||| |||||||||||| ||||| ||| |||||||||| ||||| |||||||| ||||||    
T  40416565 atccaactcattaatctatagatctttcttaatagtttgtcttatagtttttctaggtct 40416506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 281 - 339
Target Start/End: Complemental strand, 42501303 - 42501245
Alignment:
Q  281 tatcccactcattaatctctagatgtttattaatagtttctcttacagtttttcaaggt 339  Q
    ||||| |||||||||||| ||||| ||| |||||| ||||||||| |||||||| ||||    
T  42501303 tatccaactcattaatctatagatctttcttaataatttctcttatagtttttctaggt 42501245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 322
Target Start/End: Complemental strand, 12135902 - 12135861
Alignment:
Q  281 tatcccactcattaatctctagatgtttattaatagtttctc 322  Q
    ||||| |||||||||||||||||| ||| |||||||||||||    
T  12135902 tatccaactcattaatctctagatttttcttaatagtttctc 12135861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 334
Target Start/End: Complemental strand, 12231560 - 12231507
Alignment:
Q  281 tatcccactcattaatctctagatgtttattaatagtttctcttacagtttttc 334  Q
    ||||| ||||||||||||| |||| ||| |||||||| ||||||| ||||||||    
T  12231560 tatccaactcattaatctcgagatctttcttaatagtctctcttatagtttttc 12231507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 333
Target Start/End: Complemental strand, 8796396 - 8796352
Alignment:
Q  289 tcattaatctctagatgtttattaatagtttctcttacagttttt 333  Q
    |||||||| ||||||| ||| |||||||||||||||| |||||||    
T  8796396 tcattaatatctagatctttcttaatagtttctcttaaagttttt 8796352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 280 - 341
Target Start/End: Complemental strand, 4011279 - 4011218
Alignment:
Q  280 ttatcccactcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 341  Q
    |||||| |||||||||||| ||||| ||| |||||||||||||||| |||||||| ||||||    
T  4011279 ttatccaactcattaatctttagatctttcttaatagtttctcttatagtttttctaggtct 4011218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 282 - 341
Target Start/End: Original strand, 35643694 - 35643753
Alignment:
Q  282 atcccactcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 341  Q
    |||| |||||||||||||||||| ||| |||||| ||||||||| |||||||| ||||||    
T  35643694 atccaactcattaatctctagatctttcttaataatttctcttatagtttttctaggtct 35643753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 341
Target Start/End: Complemental strand, 23023420 - 23023360
Alignment:
Q  281 tatcccactcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 341  Q
    ||||| |||||||||||| ||||| ||| ||| |||||||||||| |||||||| ||||||    
T  23023420 tatccaactcattaatctgtagatctttcttagtagtttctcttatagtttttctaggtct 23023360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 341
Target Start/End: Original strand, 38178347 - 38178407
Alignment:
Q  281 tatcccactcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 341  Q
    ||||| |||||||||| ||||| | ||| |||||||||||||||| |||||||| ||||||    
T  38178347 tatccaactcattaatgtctaggtctttgttaatagtttctcttatagtttttctaggtct 38178407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 334
Target Start/End: Original strand, 39967587 - 39967639
Alignment:
Q  282 atcccactcattaatctctagatgtttattaatagtttctcttacagtttttc 334  Q
    |||| ||||||||||| |||||| ||| |||||||||||||||| ||||||||    
T  39967587 atccaactcattaatcgctagatctttcttaatagtttctcttatagtttttc 39967639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 282 - 341
Target Start/End: Original strand, 38391981 - 38392040
Alignment:
Q  282 atcccactcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 341  Q
    ||||||||||||||||| ||||| ||| ||||| ||||||| || |||||||| ||||||    
T  38391981 atcccactcattaatctgtagatctttcttaatggtttctcatatagtttttctaggtct 38392040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 334
Target Start/End: Complemental strand, 79215 - 79169
Alignment:
Q  288 ctcattaatctctagatgtttattaatagtttctcttacagtttttc 334  Q
    ||||||||||||||||| ||| |||||||||||||||| ||| ||||    
T  79215 ctcattaatctctagatctttcttaatagtttctcttatagtgtttc 79169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 341
Target Start/End: Complemental strand, 16351567 - 16351513
Alignment:
Q  287 actcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 341  Q
    ||||||||||||||||||  || |||||||||||||| | |||||||| ||||||    
T  16351567 actcattaatctctagatccttcttaatagtttctctaatagtttttctaggtct 16351513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 341
Target Start/End: Original strand, 17491747 - 17491801
Alignment:
Q  287 actcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 341  Q
    ||||||||||||| |  | ||| ||||||||||||||||||||||||| ||||||    
T  17491747 actcattaatctccaagtctttcttaatagtttctcttacagtttttctaggtct 17491801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 327
Target Start/End: Complemental strand, 16705941 - 16705896
Alignment:
Q  282 atcccactcattaatctctagatgtttattaatagtttctcttaca 327  Q
    |||| |||||||||||||||| | ||| ||||||||||||||||||    
T  16705941 atccaactcattaatctctagctttttcttaatagtttctcttaca 16705896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 341
Target Start/End: Original strand, 9904977 - 9905029
Alignment:
Q  289 tcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 341  Q
    |||||||| |||| || |||||||||||||||||||  |||||||| ||||||    
T  9904977 tcattaatttctaaatctttattaatagtttctcttgtagtttttctaggtct 9905029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 341
Target Start/End: Original strand, 10079994 - 10080054
Alignment:
Q  281 tatcccactcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 341  Q
    ||||| |||||||||||||||||| ||| |||| ||||| ||||| ||||| || ||||||    
T  10079994 tatccaactcattaatctctagatctttcttaacagtttttcttatagtttctctaggtct 10080054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 340
Target Start/End: Complemental strand, 39388978 - 39388918
Alignment:
Q  281 tatcccactcattaatctctagatgtttattaatagtttctc-ttacagtttttcaaggtc 340  Q
    ||||| |||||||||||||||||| |||  |||||||||||| ||| |||||||| |||||    
T  39388978 tatccaactcattaatctctagatctttcctaatagtttctctttatagtttttctaggtc 39388918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 281 - 334
Target Start/End: Original strand, 46431766 - 46431819
Alignment:
Q  281 tatcccactcattaatctctagatgtttattaatagtttctcttacagtttttc 334  Q
    ||||| |||||||||||||||||| ||| |||||||||||||||| ||||||||    
T  46431766 tatccaactcattaatctctagatcttttttaatagtttctcttatagtttttc 46431819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 287 - 339
Target Start/End: Original strand, 36820070 - 36820122
Alignment:
Q  287 actcattaatctctagatgtttattaatagtttctcttacagtttttcaaggt 339  Q
    |||||||||||||||||| ||| |||||||||||||||| |||||||| ||||    
T  36820070 actcattaatctctagatctttcttaatagtttctcttatagtttttctaggt 36820122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 287 - 341
Target Start/End: Original strand, 2340810 - 2340864
Alignment:
Q  287 actcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 341  Q
    |||||||||||||||||| ||| |||||||||||||||| |||||| | ||||||    
T  2340810 actcattaatctctagatctttcttaatagtttctcttatagttttcctaggtct 2340864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 341
Target Start/End: Complemental strand, 43308757 - 43308697
Alignment:
Q  281 tatcccactcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 341  Q
    ||||| ||| |||||||||||||| ||| |||||||||||||||  |||||||| ||||||    
T  43308757 tatccaactgattaatctctagatttttcttaatagtttctcttgtagtttttctaggtct 43308697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 282 - 341
Target Start/End: Original strand, 19676169 - 19676228
Alignment:
Q  282 atcccactcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 341  Q
    |||| ||||||||| ||||| || |||  |||||||||||||||||||||||| ||||||    
T  19676169 atccaactcattaacctctaaatttttcctaatagtttctcttacagtttttctaggtct 19676228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 281 - 340
Target Start/End: Original strand, 37598257 - 37598315
Alignment:
Q  281 tatcccactcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtc 340  Q
    ||||| |||||||||||||||||| | | |||||||||||||||| |||||||| |||||    
T  37598257 tatccaactcattaatctctagatatatcttaatagtttctctta-agtttttctaggtc 37598315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 282 - 341
Target Start/End: Original strand, 39600769 - 39600828
Alignment:
Q  282 atcccactcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 341  Q
    |||| ||||||||| ||||| || ||| |||||||||||||||| |||||||| ||||||    
T  39600769 atccaactcattaacctctaaatctttcttaatagtttctcttatagtttttctaggtct 39600828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 341
Target Start/End: Complemental strand, 11581633 - 11581579
Alignment:
Q  287 actcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 341  Q
    ||||||| |||| ||||| ||| |||||||||||||||| |||||||| ||||||    
T  11581633 actcatttatctatagatctttcttaatagtttctcttatagtttttctaggtct 11581579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 334
Target Start/End: Original strand, 41452826 - 41452880
Alignment:
Q  280 ttatcccactcattaatctctagatgtttattaatagtttctcttacagtttttc 334  Q
    |||||| |||||||||||||||||| ||| ||||||||||  |||| ||||||||    
T  41452826 ttatccaactcattaatctctagatctttcttaatagtttaacttatagtttttc 41452880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 282 - 341
Target Start/End: Original strand, 9556457 - 9556516
Alignment:
Q  282 atcccactcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 341  Q
    |||| ||||||||||| |||||| ||| |||||||||| ||||| |||||||||||||||    
T  9556457 atccaactcattaatcactagatctttcttaatagtttatcttatagtttttcaaggtct 9556516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 276 - 331
Target Start/End: Complemental strand, 43832298 - 43832243
Alignment:
Q  276 atccttatcccactcattaatctctagatgtttattaatagtttctcttacagttt 331  Q
    |||||||||| ||||||||||||||||||  || |||||||||||||||| |||||    
T  43832298 atccttatccaactcattaatctctagatccttcttaatagtttctcttatagttt 43832243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 287 - 341
Target Start/End: Original strand, 26784433 - 26784487
Alignment:
Q  287 actcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 341  Q
    ||||||||||||||| || ||| |||||||||||||||| |||||||| ||||||    
T  26784433 actcattaatctctatatctttcttaatagtttctcttatagtttttctaggtct 26784487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 287 - 341
Target Start/End: Complemental strand, 33287610 - 33287556
Alignment:
Q  287 actcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 341  Q
    |||||||||| ||||||| ||| |||||||||||||||| |||||||| ||||||    
T  33287610 actcattaatttctagatctttcttaatagtttctcttatagtttttctaggtct 33287556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 289 - 341
Target Start/End: Original strand, 19235079 - 19235131
Alignment:
Q  289 tcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 341  Q
    |||||||||||||||| ||| | |||||||||||||| |||||||| ||||||    
T  19235079 tcattaatctctagatctttctcaatagtttctcttatagtttttctaggtct 19235131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 287 - 335
Target Start/End: Complemental strand, 31254477 - 31254429
Alignment:
Q  287 actcattaatctctagatgtttattaatagtttctcttacagtttttca 335  Q
    |||||||||||||||||| ||| ||||||||||  ||||||||||||||    
T  31254477 actcattaatctctagatctttcttaatagtttaacttacagtttttca 31254429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 290 - 342
Target Start/End: Complemental strand, 38435138 - 38435086
Alignment:
Q  290 cattaatctctagatgtttattaatagtttctcttacagtttttcaaggtcta 342  Q
    ||||||||||||||| ||| |||||||||||||||  |||||||| |||||||    
T  38435138 cattaatctctagatctttcttaatagtttctcttgtagtttttctaggtcta 38435086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 288 - 331
Target Start/End: Original strand, 23915787 - 23915830
Alignment:
Q  288 ctcattaatctctagatgtttattaatagtttctcttacagttt 331  Q
    ||||||||||||||||| ||| |||||||||||||||| |||||    
T  23915787 ctcattaatctctagatttttcttaatagtttctcttatagttt 23915830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 325
Target Start/End: Complemental strand, 1626384 - 1626346
Alignment:
Q  287 actcattaatctctagatgtttattaatagtttctctta 325  Q
    |||||||||||||||||| ||| ||||||||||||||||    
T  1626384 actcattaatctctagatctttcttaatagtttctctta 1626346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 341
Target Start/End: Original strand, 12026098 - 12026152
Alignment:
Q  287 actcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 341  Q
    |||||||||||||||||| ||| ||||||||||||| || ||||| || ||||||    
T  12026098 actcattaatctctagatctttcttaatagtttctcctatagtttctctaggtct 12026152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 342
Target Start/End: Original strand, 33625291 - 33625350
Alignment:
Q  287 actcattaatctctagatgtttattaatag----tttctcttacagtttttcaaggtcta 342  Q
    |||||||||||||||||| ||| |||||||    |||||||||||||||||| |||||||    
T  33625291 actcattaatctctagatatttcttaatagtttctttctcttacagtttttctaggtcta 33625350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 281 - 347
Target Start/End: Complemental strand, 42092712 - 42092646
Alignment:
Q  281 tatcccactcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtctatctgt 347  Q
    ||||| ||| ||||||||||| || ||| ||||||||||||| || |||||||| ||||||| ||||    
T  42092712 tatccaactaattaatctctacatcttttttaatagtttctcctatagtttttctaggtctacctgt 42092646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 339
Target Start/End: Complemental strand, 33504405 - 33504360
Alignment:
Q  294 aatctctagatgtttattaatagtttctcttacagtttttcaaggt 339  Q
    ||||||||||| ||| |||||||||||||||| |||||||| ||||    
T  33504405 aatctctagatctttcttaatagtttctcttatagtttttctaggt 33504360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 325
Target Start/End: Complemental strand, 19024373 - 19024329
Alignment:
Q  281 tatcccactcattaatctctagatgtttattaatagtttctctta 325  Q
    ||||| |||||||||||| ||||| ||| ||||||||||||||||    
T  19024373 tatccaactcattaatctttagatctttcttaatagtttctctta 19024329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 287 - 341
Target Start/End: Original strand, 178513 - 178567
Alignment:
Q  287 actcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 341  Q
    ||||||||||||||| || ||| |||||||||||||||| |||||||| ||||||    
T  178513 actcattaatctctatatctttcttaatagtttctcttatagtttttctaggtct 178567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 287 - 341
Target Start/End: Complemental strand, 10209225 - 10209171
Alignment:
Q  287 actcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 341  Q
    ||||||||||||||||||  || |||||||||||||||| |||||||| ||||||    
T  10209225 actcattaatctctagatccttcttaatagtttctcttatagtttttctaggtct 10209171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 281 - 334
Target Start/End: Original strand, 42639107 - 42639160
Alignment:
Q  281 tatcccactcattaatctctagatgtttattaatagtttctcttacagtttttc 334  Q
    ||||| ||||||||||| |||||| ||| ||||||||||||||| |||||||||    
T  42639107 tatccaactcattaatcgctagatctttcttaatagtttctcttgcagtttttc 42639160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 281 - 334
Target Start/End: Complemental strand, 54470402 - 54470349
Alignment:
Q  281 tatcccactcattaatctctagatgtttattaatagtttctcttacagtttttc 334  Q
    ||||| |||||||||||||||||  ||||||||||| |||||||| ||||||||    
T  54470402 tatccaactcattaatctctagaactttattaatagattctcttatagtttttc 54470349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 341
Target Start/End: Complemental strand, 47147568 - 47147508
Alignment:
Q  281 tatcccactcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 341  Q
    ||||| |||||||||||||||||| ||| ||||||||||||  || |||||||| ||||||    
T  47147568 tatccaactcattaatctctagatctttcttaatagtttcttctatagtttttctaggtct 47147508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 282 - 342
Target Start/End: Complemental strand, 50680934 - 50680874
Alignment:
Q  282 atcccactcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtcta 342  Q
    |||| |||||||||||||||||| ||| | |||| ||||||||| |||||||| |||||||    
T  50680934 atccaactcattaatctctagatctttctaaataatttctcttatagtttttctaggtcta 50680874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 287 - 342
Target Start/End: Original strand, 31961359 - 31961414
Alignment:
Q  287 actcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtcta 342  Q
    ||||||| |||||||||| |||  ||||||||||||||| |||||||| |||||||    
T  31961359 actcatttatctctagatctttcctaatagtttctcttatagtttttctaggtcta 31961414  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 291 - 342
Target Start/End: Complemental strand, 37488276 - 37488225
Alignment:
Q  291 attaatctctagatgtttattaatagtttctcttacagtttttcaaggtcta 342  Q
    |||||| ||||||| ||| |||||||||||||||| |||||||| |||||||    
T  37488276 attaatttctagatctttcttaatagtttctcttatagtttttctaggtcta 37488225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 281 - 332
Target Start/End: Complemental strand, 47372846 - 47372795
Alignment:
Q  281 tatcccactcattaatctctagatgtttattaatagtttctcttacagtttt 332  Q
    ||||| |||||||||||||| ||| ||||||| |||||||||||| ||||||    
T  47372846 tatccaactcattaatctctggatctttattagtagtttctcttatagtttt 47372795  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 325
Target Start/End: Original strand, 7544616 - 7544654
Alignment:
Q  287 actcattaatctctagatgtttattaatagtttctctta 325  Q
    |||||||||||||||||| ||| ||||||||||||||||    
T  7544616 actcattaatctctagatctttcttaatagtttctctta 7544654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 341
Target Start/End: Original strand, 7682003 - 7682057
Alignment:
Q  287 actcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 341  Q
    |||||||||||| ||||| ||| || ||||||||||||| |||||||| ||||||    
T  7682003 actcattaatctatagatttttcttgatagtttctcttatagtttttccaggtct 7682057  T

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Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 332
Target Start/End: Original strand, 26024938 - 26024988
Alignment:
Q  282 atcccactcattaatctctagatgtttattaatagtttctcttacagtttt 332  Q
    |||| |||||||||||||||||| ||| ||||||||||||| || ||||||    
T  26024938 atccaactcattaatctctagatctttcttaatagtttctcatatagtttt 26024988  T

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Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 333
Target Start/End: Original strand, 42293358 - 42293404
Alignment:
Q  287 actcattaatctctagatgtttattaatagtttctcttacagttttt 333  Q
    |||||||||| ||||||| ||| |||||||||||||||| |||||||    
T  42293358 actcattaatttctagatctttcttaatagtttctcttatagttttt 42293404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 334
Target Start/End: Original strand, 934518 - 934571
Alignment:
Q  281 tatcccactcattaatctctagatgtttattaatagtttctcttacagtttttc 334  Q
    ||||| |||||||||||||||||  ||| |||||||||||||| | ||||||||    
T  934518 tatccaactcattaatctctagaactttcttaatagtttctctaatagtttttc 934571  T

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Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 330
Target Start/End: Complemental strand, 20047630 - 20047581
Alignment:
Q  281 tatcccactcattaatctctagatgtttattaatagtttctcttacagtt 330  Q
    ||||| |||||||||||||||||| ||  |||||||||||||||| ||||    
T  20047630 tatccaactcattaatctctagatcttctttaatagtttctcttatagtt 20047581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 341
Target Start/End: Original strand, 25967359 - 25967408
Alignment:
Q  292 ttaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 341  Q
    ||||||||||||| ||| |||||||||||||||| |||| ||||| ||||    
T  25967359 ttaatctctagatcttttttaatagtttctcttatagttattcaaagtct 25967408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 334
Target Start/End: Complemental strand, 53517717 - 53517672
Alignment:
Q  289 tcattaatctctagatgtttattaatagtttctcttacagtttttc 334  Q
    |||||||||||||| | ||| || ||||||||||||||||||||||    
T  53517717 tcattaatctctagttcttttttgatagtttctcttacagtttttc 53517672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 322
Target Start/End: Original strand, 26025007 - 26025047
Alignment:
Q  282 atcccactcattaatctctagatgtttattaatagtttctc 322  Q
    |||| |||||||||||||||||| ||| |||||||||||||    
T  26025007 atccaactcattaatctctagatctttcttaatagtttctc 26025047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 339
Target Start/End: Original strand, 34233117 - 34233169
Alignment:
Q  287 actcattaatctctagatgtttattaatagtttctcttacagtttttcaaggt 339  Q
    |||||||||||||||| | ||||| |||||||||||| | |||||||| ||||    
T  34233117 actcattaatctctaggtctttatgaatagtttctctgatagtttttctaggt 34233169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 325
Target Start/End: Original strand, 37042751 - 37042795
Alignment:
Q  281 tatcccactcattaatctctagatgtttattaatagtttctctta 325  Q
    ||||| ||||| |||||||||||| ||| ||||||||||||||||    
T  37042751 tatccaactcaataatctctagatctttcttaatagtttctctta 37042795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 325
Target Start/End: Original strand, 45569096 - 45569140
Alignment:
Q  281 tatcccactcattaatctctagatgtttattaatagtttctctta 325  Q
    ||||| ||||||| |||||||||| ||| ||||||||||||||||    
T  45569096 tatccaactcattgatctctagatttttcttaatagtttctctta 45569140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0325 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 285 - 334
Target Start/End: Complemental strand, 11988 - 11939
Alignment:
Q  285 ccactcattaatctctagatgtttattaatagtttctcttacagtttttc 334  Q
    ||||||||||||||||||||  || |||||||||||||||| ||||||||    
T  11988 ccactcattaatctctagatccttcttaatagtttctcttatagtttttc 11939  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 341
Target Start/End: Original strand, 33997631 - 33997691
Alignment:
Q  281 tatcccactcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 341  Q
    ||||| ||||||||||||||||   ||| |||||||||||||||| |||||| ||||||||    
T  33997631 tatccaactcattaatctctaggcttttcttaatagtttctcttatagttttccaaggtct 33997691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 282 - 341
Target Start/End: Original strand, 34593 - 34652
Alignment:
Q  282 atcccactcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 341  Q
    |||| |||||||||||| ||||| ||| ||||| |||||||||| |||||||| ||||||    
T  34593 atccaactcattaatctttagatctttcttaatggtttctcttatagtttttctaggtct 34652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 282 - 325
Target Start/End: Original strand, 43140 - 43183
Alignment:
Q  282 atcccactcattaatctctagatgtttattaatagtttctctta 325  Q
    |||| |||||||| ||||||||| ||||||||||||||||||||    
T  43140 atccaactcattactctctagatctttattaatagtttctctta 43183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 339
Target Start/End: Original strand, 10617327 - 10617379
Alignment:
Q  287 actcattaatctctagatgtttattaatagtttctcttacagtttttcaaggt 339  Q
    ||||||||||||||||||  || ||||| |||||||||| |||||||| ||||    
T  10617327 actcattaatctctagatccttcttaatggtttctcttatagtttttctaggt 10617379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 334
Target Start/End: Original strand, 31831947 - 31831999
Alignment:
Q  282 atcccactcattaatctctagatgtttattaatagtttctcttacagtttttc 334  Q
    |||| ||||| |||||||||||| ||| |||||||||||||| | ||||||||    
T  31831947 atccaactcagtaatctctagatctttcttaatagtttctctgatagtttttc 31831999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 341
Target Start/End: Complemental strand, 2713133 - 2713079
Alignment:
Q  287 actcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 341  Q
    ||||||| ||||||||||  || |||||||||||||||| |||||||| ||||||    
T  2713133 actcattcatctctagatccttcttaatagtttctcttatagtttttctaggtct 2713079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 341
Target Start/End: Original strand, 10082838 - 10082892
Alignment:
Q  287 actcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 341  Q
    ||||||||||||||||||  || ||| |||||||||||| |||||||| ||||||    
T  10082838 actcattaatctctagatccttgttactagtttctcttatagtttttctaggtct 10082892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 341
Target Start/End: Original strand, 12576953 - 12577007
Alignment:
Q  287 actcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 341  Q
    |||||||||||||||||| ||| |||||||||| ||||  |||||||| ||||||    
T  12576953 actcattaatctctagatctttcttaatagtttatcttgtagtttttctaggtct 12577007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 341
Target Start/End: Complemental strand, 27998630 - 27998576
Alignment:
Q  287 actcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 341  Q
    |||||||||||| ||||| ||| ||| |||||||||||| |||||||| ||||||    
T  27998630 actcattaatctgtagatctttcttagtagtttctcttatagtttttctaggtct 27998576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 341
Target Start/End: Complemental strand, 2066193 - 2066132
Alignment:
Q  280 ttatcccactcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 341  Q
    |||||| |||||||||||||||||| ||| ||| |||||||| ||| | |||||| ||||||    
T  2066193 ttatccaactcattaatctctagatcttttttagtagtttcttttataatttttctaggtct 2066132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 334
Target Start/End: Complemental strand, 5303639 - 5303586
Alignment:
Q  281 tatcccactcattaatctctagatgtttattaatagtttctcttacagtttttc 334  Q
    ||||| ||||||||| ||||| || ||| | |||||||||||||||||||||||    
T  5303639 tatccaactcattaaactctaaatctttttcaatagtttctcttacagtttttc 5303586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 334
Target Start/End: Complemental strand, 14667965 - 14667913
Alignment:
Q  282 atcccactcattaatctctagatgtttattaatagtttctcttacagtttttc 334  Q
    |||| |||||||||||||||||| ||| ||| ||| |||||||| ||||||||    
T  14667965 atccaactcattaatctctagatctttcttagtagcttctcttatagtttttc 14667913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 341
Target Start/End: Complemental strand, 14749502 - 14749442
Alignment:
Q  281 tatcccactcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 341  Q
    ||||| |||| |||||||||||||  || || ||||||||||||| |||||||| ||||||    
T  14749502 tatccaactcgttaatctctagatccttcttgatagtttctcttatagtttttctaggtct 14749442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 325
Target Start/End: Original strand, 28186862 - 28186906
Alignment:
Q  281 tatcccactcattaatctctagatgtttattaatagtttctctta 325  Q
    ||||| ||||||||||||||| || ||| ||||||||||||||||    
T  28186862 tatccaactcattaatctctaaatctttcttaatagtttctctta 28186906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 341
Target Start/End: Complemental strand, 38684675 - 38684615
Alignment:
Q  281 tatcccactcattaatctctagatgtttattaatagtttctcttacagtttttcaaggtct 341  Q
    ||||| ||| |||||||||||||| ||| |||| ||||||||||  |||||||| ||||||    
T  38684675 tatccaactaattaatctctagatctttcttaaaagtttctcttgtagtttttctaggtct 38684615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 334
Target Start/End: Complemental strand, 43475433 - 43475382
Alignment:
Q  282 atcccactcattaatctctagatgtttattaatagtttctcttacagtttttc 334  Q
    |||| |||||||||||||| ||| ||| |||||||||||||||| ||||||||    
T  43475433 atccaactcattaatctctggatctttcttaatagtttctctta-agtttttc 43475382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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