View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5288_high_17 (Length: 345)
Name: NF5288_high_17
Description: NF5288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5288_high_17 |
 | |
|
| [»] scaffold0074 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 292; Significance: 1e-164; HSPs: 10)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 27878957 - 27878622
Alignment:
| Q |
1 |
gtttctcctaggtagtgttagtgtttgtattctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaatttcttc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
27878957 |
gtttctcctaggtagtgttagtgtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttc |
27878858 |
T |
|
| Q |
101 |
cacttagtgaaagttctctactcttgccccgtggnnnnnnnccctttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctctttcctc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
27878857 |
cacttagtgaaagttctctactcttgccccgtggttttttcccctt-atttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctc |
27878759 |
T |
|
| Q |
201 |
gtctcttattttagttgcgtgataatattttgttactctggtacctaacagtggtatcagagcccttggttcgtagctgttattccgctgtgataaacta |
300 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
27878758 |
gtctcttattttagctgcgtgataatattttgttactctggtacctaacagtggtatcagagcccctggttcgtagctgttattccgctgtgataaacta |
27878659 |
T |
|
| Q |
301 |
gtggagtggtaagaaaaatcttagtatgctctgtggt |
337 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27878658 |
gtggagtggtaagaaaaatcttagtatgctctgtggt |
27878622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 27874236 - 27873990
Alignment:
| Q |
1 |
gtttctcctaggtagtgttagtgtttgtattctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaatttcttc |
100 |
Q |
| |
|
||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
27874236 |
gtttctcctagtttgtgttagt--ttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttc |
27874139 |
T |
|
| Q |
101 |
cacttagtgaaagttctctactcttgccccgtggnnnnnnnccctttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctctttcctc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
27874138 |
cacttagtgaaagttctctactcttgccccgtgg-ttttttccctttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctc |
27874040 |
T |
|
| Q |
201 |
gtctcttattttagttgcgtgataatattttgttactctggtacctaaca |
250 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
27874039 |
ttctcttattttagatgcgtgataatattttgttactctggtacctaaca |
27873990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 1234772 - 1235018
Alignment:
| Q |
1 |
gtttctcctaggtagtgttagtgtttgtattctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaatttcttc |
100 |
Q |
| |
|
||||||||||| | |||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1234772 |
gtttctcctagtttgtgttagt--tagtattctcctatttataagagagagtggtatttgtactctccttgtagttagagagaggtcctgtaatttcttc |
1234869 |
T |
|
| Q |
101 |
cacttagtgaaagttctctactcttgccccgtggnnnnnnnccctttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctctttcctc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
1234870 |
cacttagtgaaagttctctactcttgccccgtggttttttcccc-ttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctc |
1234968 |
T |
|
| Q |
201 |
gtctcttattttagttgcgtgataatattttgttactctggtacctaaca |
250 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
1234969 |
gtctcttattttagctgcgtgataatattttgttactctggtacctaaca |
1235018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 26976377 - 26976131
Alignment:
| Q |
1 |
gtttctcctaggtagtgttagtgtttgtattctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaatttcttc |
100 |
Q |
| |
|
||||||||||| | |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26976377 |
gtttctcctagtttgtgttagt--tagtattctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaatttcttc |
26976280 |
T |
|
| Q |
101 |
cacttagtgaaagttctctactcttgccccgtggnnnnnnnccctttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctctttcctc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
26976279 |
cacttagtgaaagttctctactcttgccccttggttttttcccc-ttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctc |
26976181 |
T |
|
| Q |
201 |
gtctcttattttagttgcgtgataatattttgttactctggtacctaaca |
250 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
26976180 |
gtctcttattttagctgcgtgataatattttgttactctggtacctaaca |
26976131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 27 - 251
Target Start/End: Original strand, 30986603 - 30986830
Alignment:
| Q |
27 |
gtattctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttg |
126 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||||||||||||||| | |||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
30986603 |
gtattcttctatttacaagagagagtggtaattgtactctccttgcatttagagagaggtcctgcaatttcttccacttagtgaaagttctctactcttg |
30986702 |
T |
|
| Q |
127 |
ccccgtgg-nnnnnnnccctttatttgttgagggg---tttccacgtaaaatattgtgtgttcagttcctctttcctcgtctcttattttagttgcgtga |
222 |
Q |
| |
|
|||||||| | ||||||||||||||| ||||||||| |||||||||| ||||||||||||||| ||||||||||||||||| | ||||| |
|
|
| T |
30986703 |
ccccgtggttttttttttccttatttgttgaggggtactttccacgt-aaatattgtgcgttcagttcctcttttctcgtctcttattttagctacgtga |
30986801 |
T |
|
| Q |
223 |
taatattttgttactctggtacctaacag |
251 |
Q |
| |
|
|||||||||||||||||| |||||||||| |
|
|
| T |
30986802 |
taatattttgttactctgatacctaacag |
30986830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 63 - 250
Target Start/End: Original strand, 18968007 - 18968194
Alignment:
| Q |
63 |
ctctccttgtagttagagagaggtcctgtaatt-tcttccacttagtgaaagttctctactcttgccccgtggnnnnnnnccctttatttgttgaggggt |
161 |
Q |
| |
|
||||||||||| ||||||||| ||| ||||||| |||||||||||||||||||| |||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
18968007 |
ctctccttgtatttagagagaagtcttgtaattgtcttccacttagtgaaagttttctactcttgccccgtggttttttcccctt-atttgttgaggggt |
18968105 |
T |
|
| Q |
162 |
ttccacgtaaaatattgtgtgttcagttcctctttcctcgtctcttattttagttgcgtgataatattttgttactctggtacctaaca |
250 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
18968106 |
ttccacgtaaaatattatgtattcagttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaaca |
18968194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 199 - 337
Target Start/End: Original strand, 30967674 - 30967812
Alignment:
| Q |
199 |
tcgtctcttattttagttgcgtgataatattttgttactctggtacctaacagtggtatcagagcccttggttcgtagctgttattccgctgtgataaac |
298 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| ||||||| |
|
|
| T |
30967674 |
tcgtctcttattttagctgcttgataatattttgttactctggtacctaacagtggtatcagagcctttagttcgtagctgttattccgctgcgataaac |
30967773 |
T |
|
| Q |
299 |
tagtggagtggtaagaaaaatcttagtatgctctgtggt |
337 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
30967774 |
tagtggtgtggtaagaaaaatcttagtatgctctgtggt |
30967812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 27 - 204
Target Start/End: Original strand, 30966747 - 30966923
Alignment:
| Q |
27 |
gtattctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttg |
126 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||||||||||||||| | |||||||||||| ||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
30966747 |
gtattcttctatttacaagagagagtggtaattgtactctccttgcatttagagagaggttctgcaatttcttccacttagtgaaagttctctactcttg |
30966846 |
T |
|
| Q |
127 |
ccccgtggnnnnnnnccctttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctctttcctcgtct |
204 |
Q |
| |
|
||||||| || ||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
30966847 |
ccccgtgattttatttcccttatttgttgatgggtttccacgt-aaatattgtgtgttcagttcctcttttctcgtct |
30966923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 58 - 245
Target Start/End: Original strand, 21966677 - 21966860
Alignment:
| Q |
58 |
ttgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggnnnnnnnccctttatttgttgag |
157 |
Q |
| |
|
|||||||||| ||| | ||||||||||||| | |||||||||||| ||||||||||||||||||||||||||| || |||||||||| ||||| |
|
|
| T |
21966677 |
ttgtactctctttgaaattagagagaggtcttataatttcttccatttagtgaaagttctctactcttgccccatg--atttttccctttatttattgag |
21966774 |
T |
|
| Q |
158 |
gggtttccacgtaaaatattgtgtgttcagttcctctttcctcgtctcttattttagttgcgtgataatattttgttactctggtacc |
245 |
Q |
| |
|
|||||||||| | ||||||| | |||| ||||||||||| ||| | | ||| ||||| ||||||||||| ||| |||||| ||||||| |
|
|
| T |
21966775 |
gggtttccacat-aaatattttatgtttagttcctcttttctcatatgtta-tttagctgcgtgataatgtttcgttactttggtacc |
21966860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 81 - 337
Target Start/End: Complemental strand, 23012667 - 23012413
Alignment:
| Q |
81 |
agaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggnnnnnnnccctttatttgttgaggggtttccacgtaaaatattgtg |
180 |
Q |
| |
|
||||||| || ||||||| ||||||||||||||||||||||||||||| ||| ||||| |||||| || | ||||||||||||| || |||| |
|
|
| T |
23012667 |
agaggtcttgaaatttctctcacttagtgaaagttctctactcttgccca-tggtttttc-cccttaatttgt-gacgagtttccacgtaaa-taatgtg |
23012572 |
T |
|
| Q |
181 |
tgttcagttcctctttc-ctcgtctcttattttagttgcgtgataata-ttttgttactctggtacctaacagtggtatcagagcccttggttcgtagct |
278 |
Q |
| |
|
|||||| ||| ||||| |||||||||||||||||||||||||||||| |||| ||||| || |||| |||| || || ||||| |||| |||||| | |
|
|
| T |
23012571 |
tgttcaattcttctttttctcgtctcttattttagttgcgtgataatattttttttactttgttacccaacaatgtcatttgagccattggctcgtagtt |
23012472 |
T |
|
| Q |
279 |
gttattccgctgtgataaactagtggagtggtaagaaaaatcttagtatgctctgtggt |
337 |
Q |
| |
|
||| |||| | | |||| |||| |||||||||||||| ||||||||||| |||||| |
|
|
| T |
23012471 |
gttgttccacatcaacaaacaagtgcagtggtaagaaaaaacttagtatgctttgtggt |
23012413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 14)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 30950430 - 30950096
Alignment:
| Q |
1 |
gtttctcctaggtagtgttagtgtttgtattctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaatttcttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||| |
|
|
| T |
30950430 |
gtttctcctaggtagtgttagtgtttgtattctcctatttataagagagagtggtaattgtactttccttgtatttagagagaggttctgtaatttcttc |
30950331 |
T |
|
| Q |
101 |
cacttagtgaaagttctctactcttgccccgtggnnnnnnnccctttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctctttcctc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
30950330 |
cacttagtgaaagttctctactcttgccccgtggttttttccc--ttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctc |
30950233 |
T |
|
| Q |
201 |
gtctcttattttagttgcgtgataatattttgttactctggtacctaacagtggtatcagagcccttggttcgtagctgttattccgctgtgataaacta |
300 |
Q |
| |
|
| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
|
|
| T |
30950232 |
ttatcttattttagctgcgtgataatattttgttactctggtacctaacagtggtatcagagctcctggttcgtagctgttattccgctgtgataaacta |
30950133 |
T |
|
| Q |
301 |
gtggagtggtaagaaaaatcttagtatgctctgtggt |
337 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30950132 |
gtggagtggtaagaaaaatcttagtatgctctgtggt |
30950096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 337
Target Start/End: Original strand, 42265974 - 42266307
Alignment:
| Q |
1 |
gtttctcctaggtagtgttagtgtttgtattctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaatttcttc |
100 |
Q |
| |
|
||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
42265974 |
gtttctcctagtttgtgttagt--ttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttc |
42266071 |
T |
|
| Q |
101 |
cacttagtgaaagttctctactcttgccccgtggnnnnnnnccctttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctctttcctc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
42266072 |
cacttagtgaaagttctctactcttgccccgtggttttttcccctt-atttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctc |
42266170 |
T |
|
| Q |
201 |
gtctcttattttagttgcgtgataatattttgttactctggtacctaacagtggtatcagagcccttggttcgtagctgttattccgctgtgataaacta |
300 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
42266171 |
gtctcttattttagctgcgtgataatattttgttactctggtatctaacagtggtatcagagccgctggttcgtagctgttattccgctgtgataaacta |
42266270 |
T |
|
| Q |
301 |
gtggagtggtaagaaaaatcttagtatgctctgtggt |
337 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42266271 |
gtggagtggtaagaaaaatcttagtatgctctgtggt |
42266307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 48702067 - 48701734
Alignment:
| Q |
1 |
gtttctcctaggtagtgttagtgtttgtattctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaatttcttc |
100 |
Q |
| |
|
||||||||||| | |||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48702067 |
gtttctcctagtttgtgttagt--tagtattctcctatttataagagagagtggtatttgtactctccttgtagttagagagaggtcctgtaatttcttc |
48701970 |
T |
|
| Q |
101 |
cacttagtgaaagttctctactcttgccccgtggnnnnnnnccctttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctctttcctc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
48701969 |
cacttagtgaaagttctctactcttgccccgtggttttttcccctt-atttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctc |
48701871 |
T |
|
| Q |
201 |
gtctcttattttagttgcgtgataatattttgttactctggtacctaacagtggtatcagagcccttggttcgtagctgttattccgctgtgataaacta |
300 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
48701870 |
gtctcttattttagctgcgtgataatattttgttactctggtacctaacagtggtatcagagccgctggttcgtagctgttattccgctgtgataaacta |
48701771 |
T |
|
| Q |
301 |
gtggagtggtaagaaaaatcttagtatgctctgtggt |
337 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48701770 |
gtggagtggtaagaaaaatcttagtatgctctgtggt |
48701734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 30945724 - 30945476
Alignment:
| Q |
1 |
gtttctcctaggtagtgttagtgtttgtattctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaatttcttc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |
|
|
| T |
30945724 |
gtttctcctaggtagtgttagtgtttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggttctgtaatttcttc |
30945625 |
T |
|
| Q |
101 |
cacttagtgaaagttctctactcttgccccgtggnnnnnnnccctttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctctttcctc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
30945624 |
cacttagtgaaagttctctactcttgccccgtgattttttccc--ttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctc |
30945527 |
T |
|
| Q |
201 |
gtctcttattttagttgcgtgataatattttgttactctggtacctaacag |
251 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||| |||||||||| |
|
|
| T |
30945526 |
ttctcttattttagctgcgtgataatattttgttactctgatacctaacag |
30945476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 24520271 - 24520031
Alignment:
| Q |
1 |
gtttctcctaggtagtgttagtgtttgtattctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaatttcttc |
100 |
Q |
| |
|
||||||||||| | |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24520271 |
gtttctcctagtttgtgttagt--tagtattctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaatttcttc |
24520174 |
T |
|
| Q |
101 |
cacttagtgaaagttctctactcttgccccgtggnnnnnnnccctttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctctttcctc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
24520173 |
cacttagtgaaagttctctactcttgccccgtggttttttcccc-ttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctc |
24520075 |
T |
|
| Q |
201 |
gtctcttattttagttgcgtgataatattttgttactctggtac |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24520074 |
gtctcttattttagttgcgtgataatattttgttactctggtac |
24520031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 252
Target Start/End: Original strand, 42270693 - 42270941
Alignment:
| Q |
1 |
gtttctcctaggtagtgttagtgtttgtattctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaatttcttc |
100 |
Q |
| |
|
||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
42270693 |
gtttctcctagtttgtgttagt--ttgtattctcctatttataagagagagtggtaattgtactctccttgtatttagagagaggtcctgtaatttcttc |
42270790 |
T |
|
| Q |
101 |
cacttagtgaaagttctctactcttgccccgtggnnnnnnnccctttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctctttcctc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
42270791 |
cacttagtgaaagttctctactcttgccccgtggttttttcccc-ttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctc |
42270889 |
T |
|
| Q |
201 |
gtctcttattttagttgcgtgataatattttgttactctggtacctaacagt |
252 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||| |||||||| |
|
|
| T |
42270890 |
gtctcttattttagctgcgtgataatattttgttactctggtatctaacagt |
42270941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 48697378 - 48697131
Alignment:
| Q |
1 |
gtttctcctaggtagtgttagtgtttgtattctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaatttcttc |
100 |
Q |
| |
|
||||||||||| | |||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48697378 |
gtttctcctagtttgtgttagt--tagtattctcctatttataagagagagtggtatttgtactctccttgtagttagagagaggtcctgtaatttcttc |
48697281 |
T |
|
| Q |
101 |
cacttagtgaaagttctctactcttgccccgtggnnnnnnnccctttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctctttcctc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
48697280 |
cacttagtgaaagttctctactcttgccccgtggtttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctc |
48697181 |
T |
|
| Q |
201 |
gtctcttattttagttgcgtgataatattttgttactctggtacctaaca |
250 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
48697180 |
ttctcttattttagctgcgtgataatattttgttactctggtacctaaca |
48697131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 19 - 250
Target Start/End: Original strand, 10427368 - 10427597
Alignment:
| Q |
19 |
tagtgtttgtattctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaatt-tcttccacttagtgaaagttct |
117 |
Q |
| |
|
||||||| |||||||||||||| ||||||||| ||||||| ||||||||||| ||||||||| ||| ||||||| |||||||||||||||||||| | |
|
|
| T |
10427368 |
tagtgttagtattctcctatttc-aagagagag-ggtaatttgtctctccttgtatttagagagaagtcttgtaattgtcttccacttagtgaaagttat |
10427465 |
T |
|
| Q |
118 |
ctactcttgccccgtggnnnnnnnccctttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctctttcctcgtctcttattttagttg |
217 |
Q |
| |
|
||||| || |||||| | ||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
10427466 |
ctactttttccccgtagttttttcccctt-atttgttgaggggtttccgcgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagttg |
10427564 |
T |
|
| Q |
218 |
cgtgataatattttgttactctggtacctaaca |
250 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| |
|
|
| T |
10427565 |
cgtgataatattctgttactctggtacctaaca |
10427597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 41 - 237
Target Start/End: Original strand, 48782850 - 48783031
Alignment:
| Q |
41 |
ataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggnnnnnn |
140 |
Q |
| |
|
||||||||||||||||||||||||| | |||| ||||||||||||| | |||||||||||||||||||||||||||| ||| || |
|
|
| T |
48782850 |
ataagagagagtggtaattgtactc--catgtatttagagagaggtcatctaatttcttccacttagtgaaagttctc---------cccatg---tttt |
48782935 |
T |
|
| Q |
141 |
nccctttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctctttcctcgtctcttattttagttgcgtgataatattttgttact |
237 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||||||||||||||||||| ||| ||||| |||||||||| | |||||||||||||||| |||| |
|
|
| T |
48782936 |
tccctttatttgttgagaaatttccacgtaaa-tattgtgtgttcagttcctgttttctcgtttcttattttaatcgcgtgataatattttgatact |
48783031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 125
Target Start/End: Original strand, 1979269 - 1979375
Alignment:
| Q |
17 |
gttagtgtttgtattctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagttc |
116 |
Q |
| |
|
||||||| | |||||||||| |||||||||||||||||||| | ||| ||||||| | || ||||||||| ||||||||||||| |||| |||||||| |
|
|
| T |
1979269 |
gttagtgctagtattctcctgtttataagagagagtggtaaatataccctccttgcattt--agagaggtcgtgtaatttcttcctcttactgaaagtta |
1979366 |
T |
|
| Q |
117 |
tctactctt |
125 |
Q |
| |
|
||||||||| |
|
|
| T |
1979367 |
tctactctt |
1979375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 184
Target Start/End: Original strand, 1979565 - 1979604
Alignment:
| Q |
144 |
ctttatttgttgaggggtttccacgtaaaatattgtgtgtt |
184 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
1979565 |
ctttatttgttgaggggtttccacgt-aaatattgtgtgtt |
1979604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 239
Target Start/End: Original strand, 30165900 - 30165968
Alignment:
| Q |
171 |
aaatattgtgtgttcagttcctctttcctcgtctcttattttagttgcgtgataatattttgttactct |
239 |
Q |
| |
|
||||||| |||||||| ||| | ||| ||| | |||||||||||||| |||||| |||||||||||||| |
|
|
| T |
30165900 |
aaatattatgtgttcaattcattttttctcatatcttattttagttgtgtgatattattttgttactct |
30165968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 263
Target Start/End: Complemental strand, 21515516 - 21515462
Alignment:
| Q |
209 |
ttttagttgcgtgataatattttgttactctggtacctaacagtggtatcagagc |
263 |
Q |
| |
|
||||||||| |||| |||| |||||||||||| |||| |||| |||||||||||| |
|
|
| T |
21515516 |
ttttagttgtgtgaaaatactttgttactctgatacccaacaatggtatcagagc |
21515462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 271
Target Start/End: Original strand, 1999189 - 1999230
Alignment:
| Q |
230 |
ttgttactctggtacctaacagtggtatcagagcccttggtt |
271 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||| ||||||| |
|
|
| T |
1999189 |
ttgttattctgatacctaacagtggtatcagagcacttggtt |
1999230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 5823521 - 5823188
Alignment:
| Q |
1 |
gtttctcctaggtagtgttagtgtttgtattctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaatttcttc |
100 |
Q |
| |
|
||||||||||| | |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5823521 |
gtttctcctagtttgtgttagt--tagtattctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaatttcttc |
5823424 |
T |
|
| Q |
101 |
cacttagtgaaagttctctactcttgccccgtggnnnnnnnccctttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctctttcctc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
5823423 |
cacttagtgaaagttctctactcttgccccgtggttttttcccctt-atttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctc |
5823325 |
T |
|
| Q |
201 |
gtctcttattttagttgcgtgataatattttgttactctggtacctaacagtggtatcagagcccttggttcgtagctgttattccgctgtgataaacta |
300 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
5823324 |
gtctcttattttagctgcgtgataatattttgttactctggtacctaacagtggtatcagagccgctggttcgtagctgttattccgctgtgataaacta |
5823225 |
T |
|
| Q |
301 |
gtggagtggtaagaaaaatcttagtatgctctgtggt |
337 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5823224 |
gtggagtggtaagaaaaatcttagtatgctctgtggt |
5823188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 27 - 337
Target Start/End: Complemental strand, 2817486 - 2817176
Alignment:
| Q |
27 |
gtattctcctatttataagagagag--tggtaattgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagttctctactct |
124 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||| || |||||||||||||||||||||| |||||| |||||| |
|
|
| T |
2817486 |
gtattctcctatttataagagagagagtggtgattgtactctccttgtatttagagagagttcttgtaatttcttccacttagtgagagttctttactct |
2817387 |
T |
|
| Q |
125 |
tgccccgtggnnnnnnnccctttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctctttcctcgtctcttattttagttgcgtgata |
224 |
Q |
| |
|
||||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||||| |
|
|
| T |
2817386 |
tgccctgtggttttttccc--ttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcttctcttattttagctgcgtgata |
2817289 |
T |
|
| Q |
225 |
atattttgttactctggtacctaacagtggtatcagagcccttggttcgtagctgttattccgctgtgataaactagtggagtggtaagaaaaatcttag |
324 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||| || |||||||||||| ||||||||||||||||||| |
|
|
| T |
2817288 |
atattttgttactctggtacctaacagtggtatcaaagccgctggttcgtagttgttattccgcagtaataaactagtggtgtggtaagaaaaatcttag |
2817189 |
T |
|
| Q |
325 |
tatgctctgtggt |
337 |
Q |
| |
|
|||||| |||||| |
|
|
| T |
2817188 |
tatgctatgtggt |
2817176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 5818759 - 5818513
Alignment:
| Q |
1 |
gtttctcctaggtagtgttagtgtttgtattctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaatttcttc |
100 |
Q |
| |
|
||||||||||| | |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5818759 |
gtttctcctagtttgtgttagt--tagtattctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaatttcttc |
5818662 |
T |
|
| Q |
101 |
cacttagtgaaagttctctactcttgccccgtggnnnnnnnccctttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctctttcctc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
5818661 |
cacttagtgaaagttctctactcttgccccgtggttttttcccc-ttattagttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctc |
5818563 |
T |
|
| Q |
201 |
gtctcttattttagttgcgtgataatattttgttactctggtacctaaca |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5818562 |
gtctcttattttagttgcgtgataatattttgttactctggtacctaaca |
5818513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 54545953 - 54546200
Alignment:
| Q |
1 |
gtttctcctaggtagtgttagtgtttgtattctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaatttcttc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
54545953 |
gtttctcctaggtagtgttagtgtttgtattctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaatttcatc |
54546052 |
T |
|
| Q |
101 |
cacttagtgaaagttctctactcttgccccgtggnnnnnnnccctttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctctttcctc |
200 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||||||| ||||||||| |||||||||||||||| ||| |
|
|
| T |
54546053 |
cacttagtgaaagttctctactctagccccgtggttttttcccc-ttatttgttgaggggtttccacgt-aaatattgtatgttcagttcctcttttctc |
54546150 |
T |
|
| Q |
201 |
gtctcttattttagttgcgtgataatattttgttactctggtacctaaca |
250 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
54546151 |
atctcttattttagctgcgtgataatattttgttactctggtacctaaca |
54546200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 146 - 242
Target Start/End: Original strand, 4579264 - 4579360
Alignment:
| Q |
146 |
ttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctctttcctcgtctcttattttagttgcgtgataatattttgttactctggt |
242 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4579264 |
ttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagttgcgtgataatattttgttactctggt |
4579360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 96 - 250
Target Start/End: Complemental strand, 24659287 - 24659136
Alignment:
| Q |
96 |
tcttccacttagtgaaagttctctactcttgccccgtggnnnnnnnccctttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctctt |
195 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
24659287 |
tcttccacttagtgaaagttct--actcttgccccgtggttttttcccctt-atttgttgaggggtttccacgtaaaatgttgtgtgttcagttcctctt |
24659191 |
T |
|
| Q |
196 |
tcctcgtctcttattttagttgcgtgataatattttgttactctggtacctaaca |
250 |
Q |
| |
|
| ||| ||||||||||||| || ||||||||||||| |||||||||||||||||| |
|
|
| T |
24659190 |
ttctcatctcttattttagctgtgtgataatattttattactctggtacctaaca |
24659136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 79 - 236
Target Start/End: Complemental strand, 31204936 - 31204781
Alignment:
| Q |
79 |
agagaggtcctgtaatttcttccacttagtgaaagttctctactcttgcc-ccgtggnnnnnnnccctttatttgttgaggggtttccacgtaaaatatt |
177 |
Q |
| |
|
|||||||| |||||||| | ||||||||||||||||||||||| ||||| ||||| | ||| |||||||||||||||||||||| ||||||| |
|
|
| T |
31204936 |
agagaggttttgtaatttttcccacttagtgaaagttctctactattgcctccgtgattttttcctctt-atttgttgaggggtttccacgt-aaatatt |
31204839 |
T |
|
| Q |
178 |
gtgtgttcagttcctctttcctcgtctcttattttagttgcgtgataatattttgttac |
236 |
Q |
| |
|
||| ||||||||||||||| || |||||| ||||| |||||| |||||||||||||| |
|
|
| T |
31204838 |
gtgagttcagttcctcttt-ttcatctcttcttttaactgcgtgctaatattttgttac |
31204781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 206 - 262
Target Start/End: Original strand, 25877086 - 25877142
Alignment:
| Q |
206 |
ttattttagttgcgtgataatattttgttactctggtacctaacagtggtatcagag |
262 |
Q |
| |
|
||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
25877086 |
ttattttagttgcgtaataatattatgttattctggtacctaacagtggtatcagag |
25877142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 54 - 112
Target Start/End: Original strand, 35977103 - 35977161
Alignment:
| Q |
54 |
gtaattgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaa |
112 |
Q |
| |
|
|||||||| ||||||||||| ||||||||| ||| |||||||| ||||||||||||||| |
|
|
| T |
35977103 |
gtaattgttctctccttgtatttagagagaagtcttgtaattttttccacttagtgaaa |
35977161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 96
Target Start/End: Complemental strand, 24671248 - 24671173
Alignment:
| Q |
19 |
tagtgtttgtattctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaattt |
96 |
Q |
| |
|
||||||| |||||||||||||| ||||||||| ||||||| ||||||||||| ||||||||| ||| |||||||| |
|
|
| T |
24671248 |
tagtgttagtattctcctatttc-aagagagag-ggtaatttgtctctccttgtatttagagagaagtcttgtaattt |
24671173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 265; Significance: 1e-148; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 9444338 - 9444005
Alignment:
| Q |
1 |
gtttctcctaggtagtgttagtgtttgtattctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaatttcttc |
100 |
Q |
| |
|
||||||||||| | |||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9444338 |
gtttctcctagtttgtgttagt--tagtattctcctatttataagagagagtggtatttgtactctccttgtagttagagagaggtcctgtaatttcttc |
9444241 |
T |
|
| Q |
101 |
cacttagtgaaagttctctactcttgccccgtggnnnnnnnccctttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctctttcctc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
9444240 |
cacttagtgaaagttctctactcttgccccgtggttttttcccctt-atttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctc |
9444142 |
T |
|
| Q |
201 |
gtctcttattttagttgcgtgataatattttgttactctggtacctaacagtggtatcagagcccttggttcgtagctgttattccgctgtgataaacta |
300 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
9444141 |
gtctcttattttagctgcgtgataatattttgttactctggtacctaacagtggtatcagagccgctggttcgtagctgttattccgctgtgataaacta |
9444042 |
T |
|
| Q |
301 |
gtggagtggtaagaaaaatcttagtatgctctgtggt |
337 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9444041 |
gtggagtggtaagaaaaatcttagtatgctctgtggt |
9444005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 9439618 - 9439372
Alignment:
| Q |
1 |
gtttctcctaggtagtgttagtgtttgtattctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaatttcttc |
100 |
Q |
| |
|
||||||||||| | |||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9439618 |
gtttctcctagtttgtgttagt--tagtattctcctatttataagagagagtggtatttgtactctccttgtagttagagagaggtcctgtaatttcttc |
9439521 |
T |
|
| Q |
101 |
cacttagtgaaagttctctactcttgccccgtggnnnnnnnccctttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctctttcctc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
9439520 |
cacttagtgaaagttctctactcttgccccgtggttttttcccc-ttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctc |
9439422 |
T |
|
| Q |
201 |
gtctcttattttagttgcgtgataatattttgttactctggtacctaaca |
250 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
9439421 |
gtctcttattttagctgcgtgataatattttgttactctggtacctaaca |
9439372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 177 - 233
Target Start/End: Original strand, 4799315 - 4799371
Alignment:
| Q |
177 |
tgtgtgttcagttcctctttcctcgtctcttattttagttgcgtgataatattttgt |
233 |
Q |
| |
|
|||||||||| || |||||| ||| ||||||||||||| | ||||||||||||||| |
|
|
| T |
4799315 |
tgtgtgttcaatttctcttttctcatctcttattttagcagtgtgataatattttgt |
4799371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 265; Significance: 1e-148; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 337
Target Start/End: Original strand, 41718481 - 41718814
Alignment:
| Q |
1 |
gtttctcctaggtagtgttagtgtttgtattctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaatttcttc |
100 |
Q |
| |
|
||||||||||| | |||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41718481 |
gtttctcctagtttgtgttagt--tagtattctcctatttataagagagagtggtatttgtactctccttgtagttagagagaggtcctgtaatttcttc |
41718578 |
T |
|
| Q |
101 |
cacttagtgaaagttctctactcttgccccgtggnnnnnnnccctttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctctttcctc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
41718579 |
cacttagtgaaagttctctactcttgccccgtggttttttcccctt-atttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctc |
41718677 |
T |
|
| Q |
201 |
gtctcttattttagttgcgtgataatattttgttactctggtacctaacagtggtatcagagcccttggttcgtagctgttattccgctgtgataaacta |
300 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
41718678 |
gtctcttattttagctgcgtgataatattttgttactctggtacctaacagtggtatcagagccgctggttcgtagctgttattccgctgtgataaacta |
41718777 |
T |
|
| Q |
301 |
gtggagtggtaagaaaaatcttagtatgctctgtggt |
337 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41718778 |
gtggagtggtaagaaaaatcttagtatgctctgtggt |
41718814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 41723207 - 41723453
Alignment:
| Q |
1 |
gtttctcctaggtagtgttagtgtttgtattctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaatttcttc |
100 |
Q |
| |
|
||||||||||| | |||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41723207 |
gtttctcctagtttgtgttagt--tagtattctcctatttataagagagagtggtatttgtactctccttgtagttagagagaggtcctgtaatttcttc |
41723304 |
T |
|
| Q |
101 |
cacttagtgaaagttctctactcttgccccgtggnnnnnnnccctttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctctttcctc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
41723305 |
cacttagtgaaagttctctactcttgccccgtggttttttcccc-ttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctc |
41723403 |
T |
|
| Q |
201 |
gtctcttattttagttgcgtgataatattttgttactctggtacctaaca |
250 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
41723404 |
gtctcttattttagctgcgtgataatattttgttactctggtacctaaca |
41723453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 2 - 250
Target Start/End: Original strand, 34360028 - 34360273
Alignment:
| Q |
2 |
tttctcctaggtagtgttagtgtttgtattctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaatttcttcc |
101 |
Q |
| |
|
|||||||||| | |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34360028 |
tttctcctagtttgtgttagt--tagtattctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaatttcttcc |
34360125 |
T |
|
| Q |
102 |
acttagtgaaagttctctactcttgccccgtggnnnnnnnccctttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctctttcctcg |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |
|
|
| T |
34360126 |
acttagtgaaagttctctactcttgccccgtggttttttcccc-ttatttgttgaggggtttctacgtaaaatattgtgtgttcagttcctcttttctcg |
34360224 |
T |
|
| Q |
202 |
tctcttattttagttgcgtgataatattttgttactctggtacctaaca |
250 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
34360225 |
tctcttattttagctgcgtgataatattttgttactctggtacctaaca |
34360273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 27 - 250
Target Start/End: Complemental strand, 29585522 - 29585300
Alignment:
| Q |
27 |
gtattctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttg |
126 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29585522 |
gtattctcctatttataagagagagtggtaattgtactctctttgtagttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttg |
29585423 |
T |
|
| Q |
127 |
ccccgtggnnnnnnnccctttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctctttcctcgtctcttattttagttgcgtgataat |
226 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||| |
|
|
| T |
29585422 |
ccccgtggttttttcccc-ttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctgcatgataat |
29585324 |
T |
|
| Q |
227 |
attttgttactctggtacctaaca |
250 |
Q |
| |
|
|||||||||||||| ||||||||| |
|
|
| T |
29585323 |
attttgttactctgatacctaaca |
29585300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 2 - 231
Target Start/End: Original strand, 34352320 - 34352546
Alignment:
| Q |
2 |
tttctcctaggtagtgttagtgtttgtattctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaatttcttcc |
101 |
Q |
| |
|
|||||||||| | |||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34352320 |
tttctcctagtttgtgttagt--tagtattctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaatttcttcc |
34352417 |
T |
|
| Q |
102 |
acttagtgaaagttctctactcttgccccgtggnnnnnnnccctttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctctttcctcg |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
34352418 |
acttagtgaaagttctctactcttgccccgtggttttttcccc-ttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcg |
34352516 |
T |
|
| Q |
202 |
tctcttattttagttgcgtgataatatttt |
231 |
Q |
| |
|
||||||||||||| |||||||||||||||| |
|
|
| T |
34352517 |
tctcttattttagctgcgtgataatatttt |
34352546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 274
Target Start/End: Complemental strand, 23319458 - 23319392
Alignment:
| Q |
206 |
ttattttagttgcgtgataatattttgttactctggtacctaacagtggtatcagagcccttggttcgt |
274 |
Q |
| |
|
|||||||||||| || |||||||| |||| | || |||||||||||||||||||||| ||||||||| |
|
|
| T |
23319458 |
ttattttagttgtgtaataatatt--gttattatgatacctaacagtggtatcagagcttttggttcgt |
23319392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 14)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 86 - 337
Target Start/End: Original strand, 825632 - 825883
Alignment:
| Q |
86 |
tcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggnnnnnnnccctttatttgttgaggggtttccacgtaaaatattgtgtgttc |
185 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
825632 |
tcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggtttttttccccttatttgttgagtggtttccacgtaaaatattgtgtgttc |
825731 |
T |
|
| Q |
186 |
agttcctctttcctcgtctcttattttagttgcgtgataatattttgttactctggtacctaacagtggtatcagagcccttggttcgtagctgttattc |
285 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
825732 |
agttcctcttttctcgtctcttattttagctgcgtgataatattttgttactctggtacctaacagtggtatcagagccgctggttcgtagctgttattc |
825831 |
T |
|
| Q |
286 |
cgctgtgataaactagtggagtggtaagaaaaatcttagtatgctctgtggt |
337 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
825832 |
cgctgtgataaactagtgaagtggtaagaaaaatcttagtatgctctgtggt |
825883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 5198901 - 5198664
Alignment:
| Q |
1 |
gtttctcctaggtagtgttagtgtttgtattctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaatttcttc |
100 |
Q |
| |
|
||||||||||| | |||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5198901 |
gtttctcctagtttgtgttagt--tagtattctcctatttataagagagagtggtatttgtactctccttgtagttagagagaggtcctgtaatttcttc |
5198804 |
T |
|
| Q |
101 |
cacttagtgaaagttctctactcttgccccgtggnnnnnnnccctttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctctttcctc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
5198803 |
cacttagtgaaagttctctactcttgccccgtggttttttcccc-ttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctc |
5198705 |
T |
|
| Q |
201 |
gtctcttattttagttgcgtgataatattttgttactctgg |
241 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
5198704 |
gtctcttattttagctgcgtgataatattttgttactctgg |
5198664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 27 - 328
Target Start/End: Original strand, 15602972 - 15603272
Alignment:
| Q |
27 |
gtattctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttg |
126 |
Q |
| |
|
||||||||||||||| |||| ||| |||||||||||| |||| || | ||||||||||||| |||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
15602972 |
gtattctcctatttacaagatagaatggtaattgtacactccatgcatttagagagaggtcttgtaatttcttctacttagtgaaagttctctactcttg |
15603071 |
T |
|
| Q |
127 |
ccccgtggnnnnnnnccctttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctctttcctcgtctcttattttagttgcgtgataat |
226 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||| |
|
|
| T |
15603072 |
ccccgtggttttttcccctt-atttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttatttcaattgcgtgataat |
15603170 |
T |
|
| Q |
227 |
attttgttactctggtacctaacagtggtatcagagcccttggttcgtagctgttattccgctgtgataaactagtggagtggtaagaaaaatcttagta |
326 |
Q |
| |
|
||||| ||||||| ||| ||||||| |||||||| | |||||||||| |||||||||| || | ||||| |||||||||||||||| ||||||||| |
|
|
| T |
15603171 |
attttcttactctcacacccaacagtgctatcagagtcattggttcgtaattgttattccgatgcaaaaaactggtggagtggtaagaaatatcttagta |
15603270 |
T |
|
| Q |
327 |
tg |
328 |
Q |
| |
|
|| |
|
|
| T |
15603271 |
tg |
15603272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 86 - 250
Target Start/End: Original strand, 830288 - 830452
Alignment:
| Q |
86 |
tcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggnnnnnnnccctttatttgttgaggggtttccacgtaaaatattgtgtgttc |
185 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
830288 |
tcctgtaatttcttccacttagtgaaagttctccactcttgccccgtggtttttttccccttatttgttgaggggtttccacgtaaaatattgtgtgttc |
830387 |
T |
|
| Q |
186 |
agttcctctttcctcgtctcttattttagttgcgtgataatattttgttactctggtacctaaca |
250 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
830388 |
agttcctcttttctcgtctcttattttaactgcgtgataatattttgttactctggtacctaaca |
830452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 19 - 243
Target Start/End: Original strand, 28715849 - 28716070
Alignment:
| Q |
19 |
tagtgtttgtattctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagttctc |
118 |
Q |
| |
|
||||||| ||||||||||||||||| || | ||||||||||||||||||||| | ||||||||| ||||||||||||||||||||| |||||||||||| |
|
|
| T |
28715849 |
tagtgttagtattctcctatttataggaaacggtggtaattgtactctccttgcatttagagagatgtcctgtaatttcttccactttgtgaaagttctc |
28715948 |
T |
|
| Q |
119 |
tactcttgccccgtggnnnnnnnccctttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctctttcctcgtctcttattttagttgc |
218 |
Q |
| |
|
|| |||| | |||| ||| |||||| |||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||| || |
|
|
| T |
28715949 |
tattcttctcttgtgg--tttttccccttatttaatgaggggtttccacgt-aaatattgtgtgttcaattcctcttttgtcgtctcttattttaaatgt |
28716045 |
T |
|
| Q |
219 |
gtgataatattttgttactctggta |
243 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
28716046 |
gtgataatattttgttactctggta |
28716070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 63 - 241
Target Start/End: Complemental strand, 30397096 - 30396920
Alignment:
| Q |
63 |
ctctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaa-gttctctactcttgccccgtggnnnnnnnccctttatttgttgaggggt |
161 |
Q |
| |
|
||||||||||| |||| ||||||| |||||||||||||||||||||||| |||||||||||| |||| ||| ||||| |||||||||||||| |
|
|
| T |
30397096 |
ctctccttgtatatagaaagaggtcttgtaatttcttccacttagtgaaaagttctctactctcgccctgtgatttttttccctt-atttgttgaggggt |
30396998 |
T |
|
| Q |
162 |
ttccacgtaaaatattgtgtgttcagttcctctttcctcgtctcttattttagttgcgtgataatattttgttactctgg |
241 |
Q |
| |
|
||| ||| ||||||| ||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
30396997 |
ttcaacg-aaaatat-gtgtgttcagttcgtcttttctcgtctcttattttagctgcgtgataatattttgctactctgg |
30396920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 21 - 120
Target Start/End: Original strand, 8004161 - 8004259
Alignment:
| Q |
21 |
gtgtttgtattctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagttctcta |
120 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||||||||||||| ||| | ||| |||||||| | |||||||||||| | |||||||||| |||| |
|
|
| T |
8004161 |
gtgttagtattctcctatttataagagagagt-gtaattgtactcttcttacatttaaagagaggttttataatttcttccattcagtgaaagttttcta |
8004259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 29 - 337
Target Start/End: Complemental strand, 13844014 - 13843710
Alignment:
| Q |
29 |
attctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgcc |
128 |
Q |
| |
|
|||||||||||| ||| | |||||||||||| || ||| |||||| ||| | || ||||||||||||||||||||||| ||||| |||| |||| || | |
|
|
| T |
13844014 |
attctcctatttttaaaatagagtggtaattttattcttcttgtatttataaaggggtcctgtaatttcttccacttaatgaaaattctatacttttaac |
13843915 |
T |
|
| Q |
129 |
ccgtggnnnnnnnccctttatttgttgaggggtttccacgtaaaatattgtgtgttca-gttcctctttcctcgtctcttattttagttgcgtgataata |
227 |
Q |
| |
|
| | | | |||||||||||||||||||||||| |||||| |||||||| || || ||| ||| |||| |||| || |||||||||| |
|
|
| T |
13843914 |
c--tataatttttctccttatttgttgaggggtttccacgt-aaatat--tgtgttcatttttcttttttctcaaaacttactttacttacgtgataata |
13843820 |
T |
|
| Q |
228 |
ttttgttactctggtacctaacagtggtatcagagcccttggttcgtagctgttattccgctgtgataaactagtggagtggtaagaaaaatcttagtat |
327 |
Q |
| |
|
|||| |||||||| || | | |||||||| |||||| |||| |||| ||| ||||||||| ||||| ||||||||||||||||||| ||||||| |
|
|
| T |
13843819 |
ttttattactctgatagccacaagtggtattagagccattggctcgtgatagttgttccgctgtagcaaactggtggagtggtaagaaaaatattagtat |
13843720 |
T |
|
| Q |
328 |
gctctgtggt |
337 |
Q |
| |
|
| | |||||| |
|
|
| T |
13843719 |
gttatgtggt |
13843710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 146 - 250
Target Start/End: Complemental strand, 31593014 - 31592910
Alignment:
| Q |
146 |
ttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctctttcctcgtctcttattttagttgcgtgataatattttgttactctggtacc |
245 |
Q |
| |
|
|||||| ||||| | |||||||||||| |||||| |||| |||||||||| ||||||||||||| || || ||||||||||| ||||||| || |||| |
|
|
| T |
31593014 |
ttatttattgagagatttccacgtaaattattgtatgttatgttcctcttttctcgtctcttattctatctgtgtgataatattatgttactttgatacc |
31592915 |
T |
|
| Q |
246 |
taaca |
250 |
Q |
| |
|
|||| |
|
|
| T |
31592914 |
caaca |
31592910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 825600 - 825635
Alignment:
| Q |
1 |
gtttctcctaggtagtgttagtgtttgtattctcct |
36 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
825600 |
gtttctcctaggtagtgttagtgtttgtattctcct |
825635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 830256 - 830291
Alignment:
| Q |
1 |
gtttctcctaggtagtgttagtgtttgtattctcct |
36 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
830256 |
gtttctcctaggtagtgttagtgtttgtattctcct |
830291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 27 - 96
Target Start/End: Complemental strand, 13840456 - 13840387
Alignment:
| Q |
27 |
gtattctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaattt |
96 |
Q |
| |
|
||||||| ||||| ||||||||| | ||||||||||||||||| || |||||||||||| |||||||| |
|
|
| T |
13840456 |
gtattcttttatttttaagagagaattgtaattgtactctccttatatttagagagaggttttgtaattt |
13840387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 230
Target Start/End: Complemental strand, 12175828 - 12175768
Alignment:
| Q |
170 |
aaaatattgtgtgttcagttcctctttcctcgtctcttattttagttgcgtgataatattt |
230 |
Q |
| |
|
||||||||||||||||| || || ||| || ||| ||||||||||||||||||||||||| |
|
|
| T |
12175828 |
aaaatattgtgtgttcaatttcttttttatcatcttttattttagttgcgtgataatattt |
12175768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 179 - 250
Target Start/End: Complemental strand, 13840311 - 13840240
Alignment:
| Q |
179 |
tgtgttcagttcctctttcctcgtctcttattttagttgcgtgataatattttgttactctggtacctaaca |
250 |
Q |
| |
|
||||||| ||||||| || ||| ||| ||||| || || |||||||||||||||||| ||||||||| |||| |
|
|
| T |
13840311 |
tgtgttcggttcctcctttctcatcttttattataattacgtgataatattttgttattctggtacccaaca |
13840240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 139; Significance: 1e-72; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 19 - 245
Target Start/End: Complemental strand, 16183860 - 16183636
Alignment:
| Q |
19 |
tagtgtttgtattctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaatt-tcttccacttagtgaaagttct |
117 |
Q |
| |
|
||||||| |||||||||||||| ||||||||| ||||||| ||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
16183860 |
tagtgttagtattctcctatttc-aagagagag-ggtaatttgtctctccttgtatttagagagaggtcttgtaattgtcttccacttagtgaaagttct |
16183763 |
T |
|
| Q |
118 |
ctactcttgccccgtggnnnnnnnccctttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctctttcctcgtctcttattttagttg |
217 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |
|
|
| T |
16183762 |
ctactcttgccccgtggttttttcccctt-atttgttgaggggtttccacgtaaaatattgtgtgttcagttcctcttttctcgtctcttattttagctg |
16183664 |
T |
|
| Q |
218 |
cgtgataatattttgttactctggtacc |
245 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
16183663 |
cgtgataatattttgttactctggtacc |
16183636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 30235090 - 30235339
Alignment:
| Q |
1 |
gtttctcctaggtagtgttagtgtttgtattctcctatttataagagagagtggtaattgtactctccttgtagtta-gagagaggtcctgtaatttctt |
99 |
Q |
| |
|
||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||||||| |
|
|
| T |
30235090 |
gtttctcttacgtagtgttagtgtttgtattctcctatttataagagagagtggtaattgtactctccttataaataggagagaggtcctgtaatttctt |
30235189 |
T |
|
| Q |
100 |
ccacttagtgaaagttctctactcttgccccgtggnnnnnnnccctttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctctttcct |
199 |
Q |
| |
|
| | ||| |||||||| ||||||||| ||||||| ||| ||||| |||||||||||||||||| |||||||||||||||||||||||||| || |
|
|
| T |
30235190 |
ctagttattgaaagttttctactcttatcccgtggtttttttccccttattcgttgaggggtttccacgt-aaatattgtgtgttcagttcctcttttct |
30235288 |
T |
|
| Q |
200 |
cgtctcttattttagttgcgtgataatattttgttactctggtacctaaca |
250 |
Q |
| |
|
| | | ||||||||| || || ||||||||||| |||||||||||| |||| |
|
|
| T |
30235289 |
cattttttattttagctgtgtaataatattttgctactctggtacccaaca |
30235339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 27 - 274
Target Start/End: Complemental strand, 8140183 - 8139940
Alignment:
| Q |
27 |
gtattctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttg |
126 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||| ||||||||||| | ||||||||||| | |||||||||||||| |||||||||| |||| |||| |
|
|
| T |
8140183 |
gtattctcctatttc-aagagagag-ggtaatttgtctctccttgtattaagagagaggtcttataatttcttccactgagtgaaagttttctaatctta |
8140086 |
T |
|
| Q |
127 |
ccccgtggnnnnnnnccctttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctctttcctcgtctcttattttagttgcgtgataat |
226 |
Q |
| |
|
|||| ||| ||||| |||||||||||||||||||| |||| ||||||| |||||||| |||||| ||| ||||||||||||| || |||||||| |
|
|
| T |
8140085 |
ccccatggttttctcccctt-atttgttgaggggtttccacataaa-tattgtgcgttcagtttctcttttctcatctcttattttagctgtgtgataat |
8139988 |
T |
|
| Q |
227 |
attttgttactctggtacctaacagtggtatcagagcccttggttcgt |
274 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |||||| ||||||||| |
|
|
| T |
8139987 |
attttgttactctggtacccaacagtggtattagagccattggttcgt |
8139940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 63 - 330
Target Start/End: Complemental strand, 8138645 - 8138384
Alignment:
| Q |
63 |
ctctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggnnnnnnnccctttatttgttgaggggtt |
162 |
Q |
| |
|
||||||||||| |||||| |||||| |||||||||||||| ||||||||||||||||| ||||||| ||||| ||||| |||||| ||||||| |
|
|
| T |
8138645 |
ctctccttgtatttagagggaggtcttgtaatttcttccatttagtgaaagttctctaatcttgcctcgtggttttctccccttg-tttgttaaggggtt |
8138547 |
T |
|
| Q |
163 |
tccacgtaaaatattgtgtgttcagttcctctttcctcgtctcttattttagttgcgtgataatattttgttactctggtacctaacagtggtatcagag |
262 |
Q |
| |
|
||||| ||| || |||||||| |||| ||||| ||||||||||||||||| |||||||||||| |||| ||||||| |||| ||||||||||| |||| |
|
|
| T |
8138546 |
tccacataat-tactgtgtgttaagtttttcttttctcgtctcttattttagctgcgtgataatactttgatactctgctacccaacagtggtattagag |
8138448 |
T |
|
| Q |
263 |
cccttggttcgtagctgttattccgctgtgataaactagtggagtggtaagaaaaatcttagtatgct |
330 |
Q |
| |
|
|| ||||||||| | ||||||| || | |||| || ||||||||||||||||||||||||||| |
|
|
| T |
8138447 |
ccattggttcgttgtcgttattctgccg----caactggtcgagtggtaagaaaaatcttagtatgct |
8138384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 247 - 337
Target Start/End: Original strand, 25441073 - 25441163
Alignment:
| Q |
247 |
aacagtggtatcagagcccttggttcgtagctgttattccgctgtgataaactagtggagtggtaagaaaaatcttagtatgctctgtggt |
337 |
Q |
| |
|
|||||||||||||||||| ||| || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25441073 |
aacagtggtatcagagccattgatttgtagttgttattccgctgtgataaactagtggagtggtaagaaaaatcttagtatgctctgtggt |
25441163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 146 - 250
Target Start/End: Complemental strand, 36528518 - 36528415
Alignment:
| Q |
146 |
ttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctctttcctcgtctcttattttagttgcgtgataatattttgttactctggtacc |
245 |
Q |
| |
|
||||| || |||||||||||||||||| ||||||||||||| ||||||| | ||| ||||||||||||||||||| || || |||||||||||| |||| |
|
|
| T |
36528518 |
ttattcgtggaggggtttccacgtaaa-tattgtgtgttcaattcctctattctcatctcttattttagttgcgtaattttactttgttactctgatacc |
36528420 |
T |
|
| Q |
246 |
taaca |
250 |
Q |
| |
|
|||| |
|
|
| T |
36528419 |
caaca |
36528415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 91 - 237
Target Start/End: Complemental strand, 5102749 - 5102606
Alignment:
| Q |
91 |
taatttcttccacttagtgaaagttctctactcttgccccgtggnnnnnnnccctttatttgttgaggggtttccacgtaaaatattgtgtgttcagttc |
190 |
Q |
| |
|
|||||||| ||||||||| |||||| ||||||||||| || ||| ||| |||||||||||||| |||| | ||||| |||| ||| || ||| | |
|
|
| T |
5102749 |
taatttctcccacttagtaaaagttatctactcttgctccatggttttt--ccccttatttgttgagggttttc-atgtaaa-tattatgtatttagtcc |
5102654 |
T |
|
| Q |
191 |
ctctttc-ctcgtctcttattttagttgcgtgataatattttgttact |
237 |
Q |
| |
|
|||||| ||| ||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
5102653 |
ctctttttctcatcttttattttagttgagtgataatattttgttact |
5102606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0074 (Bit Score: 124; Significance: 1e-63; HSPs: 1)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 19 - 250
Target Start/End: Complemental strand, 27455 - 27226
Alignment:
| Q |
19 |
tagtgtttgtattctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaatt-tcttccacttagtgaaagttct |
117 |
Q |
| |
|
||||||| |||||| ||||||| |||||||| |||||||| ||||||||||| ||||||||| || ||||||| |||||||||||||||||||||| |
|
|
| T |
27455 |
tagtgttagtattcacctatttc-aagagaga-tggtaatttgtctctccttgtatttagagagaagtattgtaattgtcttccacttagtgaaagttct |
27358 |
T |
|
| Q |
118 |
ctactcttgccccgtggnnnnnnnccctttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctctttcctcgtctcttattttagttg |
217 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||||||||| || |
|
|
| T |
27357 |
ctactcttgccccgtggttttttcccctt-atttgttgaggggtttccacgtaaagtattgtgtgttcagtttctcttttctcgtctcttattttagctg |
27259 |
T |
|
| Q |
218 |
cgtgataatattttgttactctggtacctaaca |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
27258 |
cgtgataatattttgttactctggtacctaaca |
27226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 115; Significance: 2e-58; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 19 - 250
Target Start/End: Original strand, 4130173 - 4130401
Alignment:
| Q |
19 |
tagtgtttgtattctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaatt-tcttccacttagtgaaagttct |
117 |
Q |
| |
|
||||||| ||||| |||||||| ||||||||| ||||||| ||||||||||| ||||||||| ||| ||||||| |||||||||||||||||||||| |
|
|
| T |
4130173 |
tagtgttagtattgtcctatttc-aagagagag-ggtaatttgtctctccttgtatttagagagaagtcttgtaattatcttccacttagtgaaagttct |
4130270 |
T |
|
| Q |
118 |
ctactcttgccccgtggnnnnnnnccctttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctctttcctcgtctcttattttagttg |
217 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| |||||||||||| | ||||||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
4130271 |
ctactcttgccccgtggtttttt-ccctttatttgttgagggatttccacgtaaatt-ttgtgtgttcagttcctcttttctcgtcacttattttagttg |
4130368 |
T |
|
| Q |
218 |
cgtgataatattttgttactctggtacctaaca |
250 |
Q |
| |
|
||||||||||||||||||||| |||||||||| |
|
|
| T |
4130369 |
cgtgataatattttgttactcaagtacctaaca |
4130401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 19 - 250
Target Start/End: Original strand, 46191319 - 46191546
Alignment:
| Q |
19 |
tagtgtttgtattctcctatttataagagagagtggtaattgtactctccttgtagttagagagaggtcctgtaatt-tcttccacttagtgaaagttct |
117 |
Q |
| |
|
||||||| |||||||||||||| ||||||||| ||||||| |||||||| || ||||||||| ||| ||||||| |||||||||||||||||||||| |
|
|
| T |
46191319 |
tagtgttagtattctcctatttc-aagagagag-ggtaatttgtctctccttctatttagagagaagtcttgtaattgtcttccacttagtgaaagttct |
46191416 |
T |
|
| Q |
118 |
ctactcttgccccgtggnnnnnnnccctttatttgttgaggggtttccacgtaaaatattgtgtgttcagttcctctttcctcgtctcttattttagttg |
217 |
Q |
| |
|
||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| || |
|
|
| T |
46191417 |
ctactcttgtcccgtggttttttcccctt-atttgttgaggggtttccacgtaaaatattgtg--ttcagttcctcttttctcgtctcttattttagctg |
46191513 |
T |
|
| Q |
218 |
cgtgataatattttgttactctggtacctaaca |
250 |
Q |
| |
|
| ||||||||||||||||||||||| ||||||| |
|
|
| T |
46191514 |
catgataatattttgttactctggttcctaaca |
46191546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 63 - 245
Target Start/End: Complemental strand, 30697300 - 30697120
Alignment:
| Q |
63 |
ctctccttgtagttagagagaggtcctgtaatttcttccacttagtgaaagttctctactcttgccccgtggnnnnnnnccctttatttgttgaggggtt |
162 |
Q |
| |
|
||||||||||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||| |
|
|
| T |
30697300 |
ctctccttgtatttagaaagaggtcttgtaatttcttccacttagtgaaagttctctactcttgccacgtggctttttcccctt-atttgttgaggggtt |
30697202 |
T |
|
| Q |
163 |
tccacgtaaaatattgtgtgttcagttcctctttcctcgtctcttattttagttgcgtgataatattttgttactctggtacc |
245 |
Q |
| |
|
|||||||||| |||| |||||| ||||||||||| |||||||||||| |||| |||||||||||||||||||||||| ||||| |
|
|
| T |
30697201 |
tccacgtaaa-tattttgtgttaagttcctcttttctcgtctcttatgttagctgcgtgataatattttgttactctagtacc |
30697120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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