View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5288_high_1_N (Length: 611)

Name: NF5288_high_1_N
Description: NF5288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5288_high_1_N
NF5288_high_1_N
[»] chr5 (7 HSPs)
chr5 (30-212)||(7497998-7498176)
chr5 (352-611)||(7497556-7497816)
chr5 (266-320)||(7497851-7497905)
chr5 (176-244)||(28056382-28056450)
chr5 (535-582)||(7497500-7497547)
chr5 (176-224)||(4800521-4800570)
chr5 (176-224)||(32379949-32379997)
[»] chr2 (1 HSPs)
chr2 (177-224)||(43621968-43622015)
[»] scaffold0252 (1 HSPs)
scaffold0252 (176-218)||(8001-8043)
[»] chr4 (2 HSPs)
chr4 (221-259)||(24088521-24088559)
chr4 (176-224)||(24088584-24088632)
[»] chr8 (3 HSPs)
chr8 (176-217)||(40614217-40614258)
chr8 (176-224)||(12697733-12697781)
chr8 (176-224)||(42012610-42012658)
[»] chr7 (2 HSPs)
chr7 (176-217)||(47530318-47530359)
chr7 (164-224)||(37385253-37385313)
[»] chr3 (3 HSPs)
chr3 (159-211)||(12094422-12094475)
chr3 (176-224)||(28300668-28300716)
chr3 (176-224)||(50280107-50280155)
[»] chr1 (2 HSPs)
chr1 (163-224)||(34395939-34396000)
chr1 (176-224)||(39380839-39380887)
[»] scaffold0002 (1 HSPs)
scaffold0002 (176-224)||(440721-440769)


Alignment Details
Target: chr5 (Bit Score: 154; Significance: 2e-81; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 30 - 212
Target Start/End: Complemental strand, 7498176 - 7497998
Alignment:
Q  30 agtaccgtcttcatttgcccaactcaattttccactgcctgaaaccccgctaagttgtatgagtataaaaattaatttgcttttgagataaagtgcaaaa 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7498176 agtaccgtcttcatttgcccaactcaattttccactgcctgaaaccccgctaagttgtatgagtataaaaattaatttgcttttgagataaagtgcaaaa 7498077  T
Q  130 aggatttcaataataaatggcagcataaattttatttataaaatacaaatgatatttatacaactactctatgacaacttttg 212  Q
    ||||||||||||||||||||| |||||||||    |||||||||| |||| ||||||||||||||||||||||||||||||||    
T  7498076 aggatttcaataataaatggccgcataaatt----ttataaaatagaaattatatttatacaactactctatgacaacttttg 7497998  T

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Target: chr5; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 352 - 611
Target Start/End: Complemental strand, 7497816 - 7497556
Alignment:
Q  352 gttgagatttttggttgaaaagctgtttaatatagtaga--taataaggagtggtcccttatcttaaggattttagtcctccannnnnnngttgtcttac 449  Q
    |||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||  |||||||||||||||||||       ||||||||||    
T  7497816 gttgagatttttggttgaaaagctgtttaatatagtagagataataagaagtggtcccttattataaggattttagtcctccatttttt-gttgtcttac 7497718  T
Q  450 atgaagtggtaaagactatatgaannnnnnnnnnnnnnnnnnnnnnattgcacaactgtaaggtccttaattcgaattcaggtgaaggtgtctagcctca 549  Q
    ||||||||||||||||||||||||                      |||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  7497717 atgaagtggtaaagactatatgaaacacacacaactcacacacacaattgcacaactgtaaggtccttaattcgaactcaggtgaaggtgtctagcctca 7497618  T
Q  550 aaatagtgatcttagactttaaggactagtcctcataaggtcctgaattcgaactcatgtga 611  Q
    ||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||    
T  7497617 aaatagtgatcttagactttaaggactggtccttataagatcctgaattcgaactcatgtga 7497556  T

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Target: chr5; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 266 - 320
Target Start/End: Complemental strand, 7497905 - 7497851
Alignment:
Q  266 actaaatggttgtacaaacatcattactttttaatttttataaaaacaatgtata 320  Q
    ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||    
T  7497905 actaaattgttgtacaaatatcattactttttaatttttataaaaacaatgtata 7497851  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 176 - 244
Target Start/End: Complemental strand, 28056450 - 28056382
Alignment:
Q  176 aaatgatatttatacaactactctatgacaacttttgaacaactatctcgtactcacatcatgtgttta 244  Q
    ||||||||||  || ||||| | ||||| |||||||||||| || ||||||||||||||||||| ||||    
T  28056450 aaatgatattcgtaaaactattttatgataacttttgaacatctctctcgtactcacatcatgttttta 28056382  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 535 - 582
Target Start/End: Complemental strand, 7497547 - 7497500
Alignment:
Q  535 aggtgtctagcctcaaaatagtgatcttagactttaaggactagtcct 582  Q
    ||||||||||||| | ||||||||||| || |||||||||||||||||    
T  7497547 aggtgtctagcctaagaatagtgatctcaggctttaaggactagtcct 7497500  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 224
Target Start/End: Complemental strand, 4800570 - 4800521
Alignment:
Q  176 aaatgatatttatacaactactctatgacaactttt-gaacaactatctc 224  Q
    |||||||||||||||||||||| | ||||||||||| |||||||| ||||    
T  4800570 aaatgatatttatacaactactttttgacaacttttggaacaactctctc 4800521  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 176 - 224
Target Start/End: Complemental strand, 32379997 - 32379949
Alignment:
Q  176 aaatgatatttatacaactactctatgacaacttttgaacaactatctc 224  Q
    ||||| ||||| |||||||| | ||||||||||||||||||||| ||||    
T  32379997 aaatggtatttgtacaactagtttatgacaacttttgaacaactttctc 32379949  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 177 - 224
Target Start/End: Complemental strand, 43622015 - 43621968
Alignment:
Q  177 aatgatatttatacaactactctatgacaacttttgaacaactatctc 224  Q
    |||||||||| |||||||| | ||||||||||||||||||||| ||||    
T  43622015 aatgatatttgtacaactattttatgacaacttttgaacaactttctc 43621968  T

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Target: scaffold0252 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 176 - 218
Target Start/End: Complemental strand, 8043 - 8001
Alignment:
Q  176 aaatgatatttatacaactactctatgacaacttttgaacaac 218  Q
    |||||||||||||||||| | | ||||||||||||||||||||    
T  8043 aaatgatatttatacaaccattttatgacaacttttgaacaac 8001  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 221 - 259
Target Start/End: Complemental strand, 24088559 - 24088521
Alignment:
Q  221 tctcgtactcacatcatgtgtttactctcttccttcctt 259  Q
    |||| |||||||||||||||||||||||||| |||||||    
T  24088559 tctcatactcacatcatgtgtttactctctttcttcctt 24088521  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 176 - 224
Target Start/End: Complemental strand, 24088632 - 24088584
Alignment:
Q  176 aaatgatatttatacaactactctatgacaacttttgaacaactatctc 224  Q
    ||||||||||| |||||| | | ||||||||||||||||||||| ||||    
T  24088632 aaatgatatttgtacaaccattttatgacaacttttgaacaactctctc 24088584  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 217
Target Start/End: Complemental strand, 40614258 - 40614217
Alignment:
Q  176 aaatgatatttatacaactactctatgacaacttttgaacaa 217  Q
    |||||||||||||||||||||| ||||| || ||||||||||    
T  40614258 aaatgatatttatacaactactttatgataatttttgaacaa 40614217  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 176 - 224
Target Start/End: Complemental strand, 12697781 - 12697733
Alignment:
Q  176 aaatgatatttatacaactactctatgacaacttttgaacaactatctc 224  Q
    |||||||||||||||||||| | ||||| || |||||||||||| ||||    
T  12697781 aaatgatatttatacaactattttatgataatttttgaacaactttctc 12697733  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 176 - 224
Target Start/End: Complemental strand, 42012658 - 42012610
Alignment:
Q  176 aaatgatatttatacaactactctatgacaacttttgaacaactatctc 224  Q
    |||||||||||||||||||||| ||||| |||||||  |||||| ||||    
T  42012658 aaatgatatttatacaactactttatgataactttttgacaactttctc 42012610  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 217
Target Start/End: Complemental strand, 47530359 - 47530318
Alignment:
Q  176 aaatgatatttatacaactactctatgacaacttttgaacaa 217  Q
    |||||||||||||||||| | | |||||||||||||||||||    
T  47530359 aaatgatatttatacaaccattttatgacaacttttgaacaa 47530318  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 164 - 224
Target Start/End: Complemental strand, 37385313 - 37385253
Alignment:
Q  164 tttataaaatacaaatgatatttatacaactactctatgacaacttttgaacaactatctc 224  Q
    ||||||||| | ||||||||||| |||||||| | | |||||||||||| |||||| ||||    
T  37385313 tttataaaagataaatgatatttgtacaactattttttgacaacttttgtacaactttctc 37385253  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 211
Target Start/End: Complemental strand, 12094475 - 12094422
Alignment:
Q  159 ttttatttataaaat-acaaatgatatttatacaactactctatgacaactttt 211  Q
    ||||||||||||||| | |||||||||||||||||||| | |||||||| ||||    
T  12094475 ttttatttataaaatgagaaatgatatttatacaactattttatgacaattttt 12094422  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 176 - 224
Target Start/End: Complemental strand, 28300716 - 28300668
Alignment:
Q  176 aaatgatatttatacaactactctatgacaacttttgaacaactatctc 224  Q
    ||||||||||| |||||| ||| ||||||||||||| ||||||| ||||    
T  28300716 aaatgatatttgtacaaccactttatgacaactttttaacaactttctc 28300668  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 176 - 224
Target Start/End: Complemental strand, 50280155 - 50280107
Alignment:
Q  176 aaatgatatttatacaactactctatgacaacttttgaacaactatctc 224  Q
    ||||||||||| |||||| | |||||||||||||||| |||||| ||||    
T  50280155 aaatgatatttgtacaaccattctatgacaacttttgtacaactttctc 50280107  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 163 - 224
Target Start/End: Complemental strand, 34396000 - 34395939
Alignment:
Q  163 atttataaaatacaaatgatatttatacaactactctatgacaacttttgaacaactatctc 224  Q
    |||||||||  | ||||||||||| |||| ||| | ||||||||||||||||||||| ||||    
T  34396000 atttataaaggataaatgatatttgtacatctattttatgacaacttttgaacaactttctc 34395939  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 176 - 224
Target Start/End: Complemental strand, 39380887 - 39380839
Alignment:
Q  176 aaatgatatttatacaactactctatgacaacttttgaacaactatctc 224  Q
    |||||||||||||||||| | | |||||||||||||  |||||||||||    
T  39380887 aaatgatatttatacaaccattttatgacaacttttttacaactatctc 39380839  T

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Target: scaffold0002 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 176 - 224
Target Start/End: Original strand, 440721 - 440769
Alignment:
Q  176 aaatgatatttatacaactactctatgacaacttttgaacaactatctc 224  Q
    ||||||||||| |||||||||| |||||||||||||  |||||| ||||    
T  440721 aaatgatatttgtacaactactttatgacaacttttagacaactttctc 440769  T

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