View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5288_high_2 (Length: 418)
Name: NF5288_high_2
Description: NF5288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5288_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 337; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 33 - 397
Target Start/End: Original strand, 10239570 - 10239934
Alignment:
| Q |
33 |
agaatttggtagccagcttcgttttcgattttgtacttataggtttgaacgtaacggctacatagtgtggcttttccgtttgtgattttaacagcatgaa |
132 |
Q |
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| T |
10239570 |
agaatttggtaaccagcttcgttttcgattttgtatttataggtttgaacgtaacggctacatagtgtggcttttccgtttgtgattttaacagcatgaa |
10239669 |
T |
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| Q |
133 |
gcatgccgtcaccgtcaaagagatggtaaggtccacgtggaaggaactgagggtttggtccgtttcttatgtaaacaccgttaagtgacggtggaagtgt |
232 |
Q |
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| T |
10239670 |
gcatgccgtcaccgtcaaagagatggtaaggtccacgtggaaggaactgagggtttggtccgtttcttatgtaaacaccgttaagtgacggtggaagtgt |
10239769 |
T |
|
| Q |
233 |
gcctttaatgactttgcattgtgttggagggagctcgtctaggactggtgcaaagttttgggacaaaacatgtcttggatctacggatggttttattggt |
332 |
Q |
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| T |
10239770 |
gcctttaatgactttgcattgtgttggagggagttcgtcaaggactggtgcaaagttttgggacaaaacatgtcttggatctacggatggttttattggt |
10239869 |
T |
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| Q |
333 |
gggtctatgaagatgttgataatgtcatcgagtgtgttgagtattagtgctgatattgatgatgt |
397 |
Q |
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| T |
10239870 |
gggtctatgaaggtgttgatgatgtcatcgagtgtgttgagtattagtgctgagattgatgatgt |
10239934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 45 - 397
Target Start/End: Original strand, 10230802 - 10231154
Alignment:
| Q |
45 |
ccagcttcgttttcgattttgtacttataggtttgaacgtaacggctacatagtgtggcttttccgtttgtgattttaacagcatgaagcatgccgtcac |
144 |
Q |
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| T |
10230802 |
ccagctttgttttcaattttgtacttgtaggtttttacataacggctacatagtgtggctttcccgtttgagattgtaatggcatgaagcatgccgtcac |
10230901 |
T |
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| Q |
145 |
cgtcaaagagatggtaaggtccacgtggaaggaactgagggtttggtccgtttcttatgtaaacaccgttaagtgacggtggaagtgtgcctttaatgac |
244 |
Q |
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|||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||| || ||||| ||||| |||| |
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| T |
10230902 |
cgtcaaagagatggtagggtccacgtggaaggaactgtgggtttggtccgtttcttatgtaagcaccgtaaagtgacggcgggagtgtacctttgatgat |
10231001 |
T |
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| Q |
245 |
tttgcattgtgttggagggagctcgtctaggactggtgcaaagttttgggacaaaacatgtcttggatctacggatggttttattggtgggtctatgaag |
344 |
Q |
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| T |
10231002 |
tacacattgtgttggagggagttcgtctaggactggtgcaaagttttgggacaaaacatgtcttggatctacggatggttttattggtgggtctatgaag |
10231101 |
T |
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| Q |
345 |
atgttgataatgtcatcgagtgtgttgagtattagtgctgatattgatgatgt |
397 |
Q |
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| T |
10231102 |
gtgttgataatgtcatcgagtgtgttgagtattagtgctgatattgatgatgt |
10231154 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 38 - 384
Target Start/End: Complemental strand, 10255030 - 10254684
Alignment:
| Q |
38 |
ttggtagccagcttcgttttcgattttgtacttataggtttgaacgtaacggctacatagtgtggcttttccgtttgtgattttaacagcatgaagcatg |
137 |
Q |
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|||||| ||||||||||||||||||||||| || || |||||||||||||||||||| ||||| ||||||||||||| |||| ||| || ||||||||| |
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| T |
10255030 |
ttggtaaccagcttcgttttcgattttgtatttgtaagtttgaacgtaacggctacagagtgtagcttttccgtttgagattgtaatggcgtgaagcatg |
10254931 |
T |
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| Q |
138 |
ccgtcaccgtcaaagagatggtaaggtccacgtggaaggaactgagggtttggtccgtttcttatgtaaacaccgttaagtgacggtggaagtgtgcctt |
237 |
Q |
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| T |
10254930 |
ccatcaccgtcgaagaggtggtagggtccacgtggaaggaactgtgggtttggtccgtttcttatgtaaacaccgttaagtgacggtggaagtgtgcctt |
10254831 |
T |
|
| Q |
238 |
taatgactttgcattgtgttggagggagctcgtctaggactggtgcaaagttttgggacaaaacatgtcttggatctacggatggttttattggtgggtc |
337 |
Q |
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|||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10254830 |
taatgactttgcattgtgttggagggagttcgtcaaggactggtgcaaagttttgggacaaaacatgtcttggatctacggatggttttattggtgggtc |
10254731 |
T |
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| Q |
338 |
tatgaagatgttgataatgtcatcgagtgtgttgagtattagtgctg |
384 |
Q |
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||||||| ||||||| ||||| |||| |||||||| || |||||||| |
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| T |
10254730 |
tatgaaggtgttgatgatgtcgtcgaatgtgttgaatagtagtgctg |
10254684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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