View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5288_high_23 (Length: 322)
Name: NF5288_high_23
Description: NF5288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5288_high_23 |
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| [»] scaffold0479 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 32 - 321
Target Start/End: Complemental strand, 33811294 - 33811005
Alignment:
| Q |
32 |
acaattctccccctccagccaaagggaaactatccttagattagtttggagttgctgccaggcctgcagcttgtttacaaaactctatcttctcttttgg |
131 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33811294 |
acaattctccccctccagccaaagggaaactatccttagattagtttggggttgctgccaagcctgcagcttgtttacaaaactctatcttctcttttgg |
33811195 |
T |
|
| Q |
132 |
tagagcttttgtcatcatatctgctccgttgtcattggtgtgaattttctctatttgcagcagtttattctccaacacatcacgaatccaatgatacctc |
231 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33811194 |
tagagcttttgtcatcatatctgctccgttgtcattggtgtgaattttctctatttgcagcagtttattctccaacacatcacgaatccaatgatacctc |
33811095 |
T |
|
| Q |
232 |
acatcgatgtgttttgaccttgaatggtatgccgaattcttgctaaggtgaattgcactttaactatcacaatagagaacataactttct |
321 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||| ||||| |
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|
| T |
33811094 |
acatcgatgtgttttgaccttgaatggtatgtcgaattcttgctgaggtgaattgcactttgactatcacaatagagaacataaatttct |
33811005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 32 - 321
Target Start/End: Complemental strand, 33816212 - 33815923
Alignment:
| Q |
32 |
acaattctccccctccagccaaagggaaactatccttagattagtttggagttgctgccaggcctgcagcttgtttacaaaactctatcttctcttttgg |
131 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33816212 |
acaattctccccctccagccaaagggaaactatccttagattagtttggggttgctgccaagcctgcagcttgtttacaaaactctatcttctcttttgg |
33816113 |
T |
|
| Q |
132 |
tagagcttttgtcatcatatctgctccgttgtcattggtgtgaattttctctatttgcagcagtttattctccaacacatcacgaatccaatgatacctc |
231 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33816112 |
tagagcttttgtcatcatatctgctccgttgtcattggtgtgaattttctctatttgcagcagtttattctccaacacatcacgaatccaatgatacctc |
33816013 |
T |
|
| Q |
232 |
acatcgatgtgttttgaccttgaatggtatgccgaattcttgctaaggtgaattgcactttaactatcacaatagagaacataactttct |
321 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||| ||||| |
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|
| T |
33816012 |
acatcgatgtgttttgaccttgaatggtatgtcgaattcttgctgaggtgaattgcactttgactatcacaatagagaacataaatttct |
33815923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 31 - 321
Target Start/End: Original strand, 4836171 - 4836458
Alignment:
| Q |
31 |
cacaattctccccctccagccaaagggaaactatccttagattagtttggagttgctgccaggcctgcagcttgtttacaaaactctatcttctcttttg |
130 |
Q |
| |
|
|||||||||||||||||||||| |||| || ||||| |||||||||| |||||| ||| || ||||||||||| |||||||||||||||||||| | |
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|
| T |
4836171 |
cacaattctccccctccagccataggggaatg--cctta-attagtttggggttgctaccattccagcagcttgtttgcaaaactctatcttctctttcg |
4836267 |
T |
|
| Q |
131 |
gtagagcttttgtcatcatatctgctccgttgtcattggtgtgaattttctctatttgcagcagtttattctccaacacatcacgaatccaatgatacct |
230 |
Q |
| |
|
|||| | |||||||||||| |||||||| || ||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |
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|
| T |
4836268 |
gtagcggttttgtcatcatgtctgctccattctcatttgtgtgaattttctctatttgcagcagtttattctctaacacatcacgtatccaatgatacct |
4836367 |
T |
|
| Q |
231 |
cacatcgatgtgttttgaccttgaatggtatgccgaattcttgctaaggtgaattgcactttaactatcacaatagagaacataactttct |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |
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|
| T |
4836368 |
cacatcgatgtgttttgaccttgaatggtatgtcgaattcttgctgaggtgaattgcactttgactatcacaatagagaacataactttct |
4836458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 70 - 248
Target Start/End: Original strand, 24379927 - 24380105
Alignment:
| Q |
70 |
gattagtttggagttgctgccaggcctgcagcttgtttacaaaactctatcttctcttttggtagagcttttgtcatcatatctgctccgttgtcattgg |
169 |
Q |
| |
|
||||||||||| |||||||||| || ||||||||||| |||||||||||||||||||||| ||||| |||||||||||| || ||||| || | ||||| |
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|
| T |
24379927 |
gattagtttggggttgctgccaatccagcagcttgtttgcaaaactctatcttctcttttgatagaggttttgtcatcatgtcggctccattcttattgg |
24380026 |
T |
|
| Q |
170 |
tgtgaattttctctatttgcagcagtttattctccaacacatcacgaatccaatgatacctcacatcgatgtgttttga |
248 |
Q |
| |
|
|||||| |||||||| || || || |||| |||||||||||||||||||||| |||||||||||||| |||||||||| |
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|
| T |
24380027 |
tgtgaactttctctactttcaacaatttactctccaacacatcacgaatccagtgatacctcacatcattgtgttttga |
24380105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 136; Significance: 6e-71; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 70 - 321
Target Start/End: Original strand, 54967873 - 54968124
Alignment:
| Q |
70 |
gattagtttggagttgctgccaggcctgcagcttgtttacaaaactctatcttctcttttggtagagcttttgtcatcatatctgctccgttgtcattgg |
169 |
Q |
| |
|
||||| ||||| |||||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
54967873 |
gattaatttggggttgctgccaatccagcagcttgtttgcaaaactctatcttctcttttggtagagcttttgtcatcatatctgctccgttctcattgg |
54967972 |
T |
|
| Q |
170 |
tgtgaattttctctatttgcagcagtttattctccaacacatcacgaatccaatgatacctcacatcgatgtgttttgaccttgaatggtatgccgaatt |
269 |
Q |
| |
|
|||||| |||||||| || || || |||| | |||||||||||||||||||| |||||||||||||| ||||||||||| || || ||||||| || || |
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|
| T |
54967973 |
tgtgaactttctctactttcaacaatttactttccaacacatcacgaatccagtgatacctcacatcaatgtgttttgatctggagtggtatgttgagtt |
54968072 |
T |
|
| Q |
270 |
cttgctaaggtgaattgcactttaactatcacaatagagaacataactttct |
321 |
Q |
| |
|
|||||| || |||||||| || | ||| || ||||||||||||||||||||| |
|
|
| T |
54968073 |
cttgctgagatgaattgcgctctgactgtcgcaatagagaacataactttct |
54968124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0479 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: scaffold0479
Description:
Target: scaffold0479; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 70 - 321
Target Start/End: Complemental strand, 2274 - 2023
Alignment:
| Q |
70 |
gattagtttggagttgctgccaggcctgcagcttgtttacaaaactctatcttctcttttggtagagcttttgtcatcatatctgctccgttgtcattgg |
169 |
Q |
| |
|
||||||||||| |||||||||| || ||||||||||| |||||||| ||||||||||||||||||| ||| |||||||| |||||||| || ||||||| |
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|
| T |
2274 |
gattagtttggggttgctgccaatccagcagcttgtttgcaaaactcaatcttctcttttggtagaggtttggtcatcatgtctgctccattctcattgg |
2175 |
T |
|
| Q |
170 |
tgtgaattttctctatttgcagcagtttattctccaacacatcacgaatccaatgatacctcacatcgatgtgttttgaccttgaatggtatgccgaatt |
269 |
Q |
| |
|
|||||| |||||||| || || || |||| |||||||||||||||||||||| |||||||||||||| || |||||||| || || || |||| || || |
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|
| T |
2174 |
tgtgaactttctctactttcaacaatttactctccaacacatcacgaatccagtgatacctcacatcaatatgttttgatctggagtgatatgttgagtt |
2075 |
T |
|
| Q |
270 |
cttgctaaggtgaattgcactttaactatcacaatagagaacataactttct |
321 |
Q |
| |
|
|||||| || ||||| || |||| ||| || |||||||||||||| |||||| |
|
|
| T |
2074 |
cttgctgagatgaatcgcgctttgactgtcgcaatagagaacatagctttct |
2023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 87; Significance: 1e-41; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 97 - 319
Target Start/End: Original strand, 22981829 - 22982051
Alignment:
| Q |
97 |
gcagcttgtttacaaaactctatcttctcttttggtagagcttttgtcatcatatctgctccgttgtcattggtgtgaattttctctatttgcagcagtt |
196 |
Q |
| |
|
||||||||||| |||||||| ||||| ||||||||||||| |||||||||||| |||||||| || ||||||||||||| |||||||| || || || || |
|
|
| T |
22981829 |
gcagcttgtttgcaaaactcaatcttttcttttggtagaggttttgtcatcatgtctgctccattctcattggtgtgaactttctctactttcaacaatt |
22981928 |
T |
|
| Q |
197 |
tattctccaacacatcacgaatccaatgatacctcacatcgatgtgttttgaccttgaatggtatgccgaattcttgctaaggtgaattgcactttaact |
296 |
Q |
| |
|
|| |||||||||||||| ||| || || |||||||| || |||||||| || || || ||||||| ||| |||||||| || ||||| ||||| | ||| |
|
|
| T |
22981929 |
tactctccaacacatcattaatacagtggtacctcacgtcaatgtgtttcgatctagagtggtatgtcgagttcttgctgagatgaatcgcactctgact |
22982028 |
T |
|
| Q |
297 |
atcacaatagagaacataacttt |
319 |
Q |
| |
|
|| |||||||||||||| |||| |
|
|
| T |
22982029 |
gtcgcaatagagaacatagcttt |
22982051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 97 - 319
Target Start/End: Complemental strand, 23806579 - 23806357
Alignment:
| Q |
97 |
gcagcttgtttacaaaactctatcttctcttttggtagagcttttgtcatcatatctgctccgttgtcattggtgtgaattttctctatttgcagcagtt |
196 |
Q |
| |
|
||||||||||| |||||||| ||||| ||||||||||||| |||||||||||| |||||||| || ||||||||||||| |||||||| || || || || |
|
|
| T |
23806579 |
gcagcttgtttgcaaaactcaatcttttcttttggtagaggttttgtcatcatgtctgctccattctcattggtgtgaactttctctactttcaacaatt |
23806480 |
T |
|
| Q |
197 |
tattctccaacacatcacgaatccaatgatacctcacatcgatgtgttttgaccttgaatggtatgccgaattcttgctaaggtgaattgcactttaact |
296 |
Q |
| |
|
|| |||||||||||||| ||| || || |||||||| || |||||||| || || || ||||||| ||| |||||||| || ||||| ||||| | ||| |
|
|
| T |
23806479 |
tactctccaacacatcattaatacagtggtacctcacgtcaatgtgtttcgatctagagtggtatgtcgagttcttgctgagatgaatcgcactctgact |
23806380 |
T |
|
| Q |
297 |
atcacaatagagaacataacttt |
319 |
Q |
| |
|
|| |||||||||||||| |||| |
|
|
| T |
23806379 |
gtcgcaatagagaacatagcttt |
23806357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 174 - 262
Target Start/End: Original strand, 1105112 - 1105200
Alignment:
| Q |
174 |
aattttctctatttgcagcagtttattctccaacacatcacgaatccaatgatacctcacatcgatgtgttttgaccttgaatggtatg |
262 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||| ||| | || ||||||| || |||| |||||||||||| ||| ||||||||| |
|
|
| T |
1105112 |
aattttctctatttaaagcagtttattctctaacacgtcatgtattcaatgatttcttacattgatgtgttttgatcttaaatggtatg |
1105200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 142
Target Start/End: Original strand, 1104991 - 1105101
Alignment:
| Q |
32 |
acaattctccccctccagccaaagggaaactatccttagattagtttggagttgctgccaggcctgcagcttgtttacaaaactctatcttctcttttgg |
131 |
Q |
| |
|
|||||| || ||||| ||| ||| | ||||||| ||||||||| ||||| |||||| || ||||||| | |||| |||| |||| ||||| |||||| |
|
|
| T |
1104991 |
acaattatctccctctagctaaacgaaaactatacttagattaatttgggattgctgtcaagcctgcaattgctttataaaaatctaacttcttttttgg |
1105090 |
T |
|
| Q |
132 |
tagagcttttg |
142 |
Q |
| |
|
||||||||||| |
|
|
| T |
1105091 |
tagagcttttg |
1105101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 226 - 319
Target Start/End: Original strand, 25003630 - 25003721
Alignment:
| Q |
226 |
tacctcacatcgatgtgttttgaccttgaatggtatgccgaattcttgctaaggtgaattgcactttaactatcacaatagagaacataacttt |
319 |
Q |
| |
|
||||||||||| |||||||| |||||||| || |||| ||| || || || |||||||||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
25003630 |
tacctcacatctatgtgttt-gaccttgattg-tatgtcgagttatttctgaggtgaattgcactttgactatcacaatagggaacataacttt |
25003721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 88
Target Start/End: Original strand, 25003455 - 25003511
Alignment:
| Q |
32 |
acaattctccccctccagccaaagggaaactatccttagattagtttggagttgctg |
88 |
Q |
| |
|
||||||||| ||||||||||||||||||| |||| | | |||||||||| ||||||| |
|
|
| T |
25003455 |
acaattctctccctccagccaaagggaaaatatcttcaaattagtttggggttgctg |
25003511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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