View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5288_high_24 (Length: 316)

Name: NF5288_high_24
Description: NF5288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5288_high_24
NF5288_high_24
[»] chr5 (6 HSPs)
chr5 (1-306)||(37704666-37704971)
chr5 (1-153)||(37699188-37699349)
chr5 (1-93)||(37437728-37437823)
chr5 (1-37)||(37698828-37698864)
chr5 (211-253)||(30384256-30384298)
chr5 (212-248)||(1630012-1630048)
[»] chr4 (2 HSPs)
chr4 (17-153)||(16840857-16841003)
chr4 (213-253)||(31095092-31095132)
[»] chr6 (2 HSPs)
chr6 (213-255)||(17411089-17411131)
chr6 (212-255)||(196244-196287)
[»] chr8 (1 HSPs)
chr8 (213-258)||(18080600-18080645)
[»] chr3 (1 HSPs)
chr3 (212-255)||(44291420-44291463)
[»] chr7 (2 HSPs)
chr7 (212-250)||(12422352-12422390)
chr7 (223-255)||(32857805-32857837)


Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 37704666 - 37704971
Alignment:
Q  1 cttatttcaagttgtgataagataacaaattcatttaagtagcaatcacagtgagtaatgtgcttaaaaatacacctgaaatgaagaaaataacattaat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37704666 cttatttcaagttgtgataagataacaaattcatttaagtagcaatcacagtgagtaatgtgcttaaaaatacacctgaaatgaagaaaataacattaat 37704765  T
Q  101 tgtatttagaatcggagacttagacttcttcaaatgtacatactttaaagagcaaattacgatacttttaagttatttaattataacaaatcggnnnnnn 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||          
T  37704766 tgtatttagaatcggagacttagacttcttcaaatgtacatactttaaagagcaaattacgagacttttaagttatttaattataacaaatcggtttttt 37704865  T
Q  201 nnnnnnnnnncgtatcacttacgtcatttaagttatttaattataacaagttagttatgtagttgctcaaaaaacaagttagttatgtaagtatttttca 300  Q
              |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  37704866 aagattttttcgtatcacttgcgtcatttaagttatttaattataacaagttagttatgtagttgctcaaaaaacaagttagttatgtaagtatttttcg 37704965  T
Q  301 taacac 306  Q
    ||||||    
T  37704966 taacac 37704971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 37699188 - 37699349
Alignment:
Q  1 cttatttcaagttgtgataa---gataacaaattcatttaagtagcaatcacagtgagtaatgtgcttaaaaatacacctgaaatgaagaaaat------ 91  Q
    |||||| |||||||||||||   |||||||||||||||||||||||||||| | |||||||| ||||||||||||||||| |||||||||||||          
T  37699188 cttattgcaagttgtgataataagataacaaattcatttaagtagcaatcagaatgagtaatttgcttaaaaatacacctaaaatgaagaaaataataac 37699287  T
Q  92 aacattaattgtatttagaatcggagacttagacttcttcaaatgtacatactttaaagagc 153  Q
    |||||||||||||||||| | ||||||||||||||||||||| || ||| ||||||||||||    
T  37699288 aacattaattgtatttagcaacggagacttagacttcttcaactgaacagactttaaagagc 37699349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 37437728 - 37437823
Alignment:
Q  1 cttatttcaagttgtgataa---gataacaaattcatttaagtagcaatcacagtgagtaatgtgcttaaaaatacacctgaaatgaagaaaataa 93  Q
    |||||| |||||||||||||   |||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||||||    
T  37437728 cttattgcaagttgtgataataagataacaaattcatttaagtagcaatcagaatgagtaatttgcttaaaaatacacctgaaatgaagaaaataa 37437823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 37698828 - 37698864
Alignment:
Q  1 cttatttcaagttgtgataagataacaaattcattta 37  Q
    |||||| ||||||||||||||||||||||||||||||    
T  37698828 cttattgcaagttgtgataagataacaaattcattta 37698864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 253
Target Start/End: Original strand, 30384256 - 30384298
Alignment:
Q  211 cgtatcacttacgtcatttaagttatttaattataacaagtta 253  Q
    ||||| ||||||||| |||||||||||||||| ||||||||||    
T  30384256 cgtattacttacgtcttttaagttatttaattgtaacaagtta 30384298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 212 - 248
Target Start/End: Complemental strand, 1630048 - 1630012
Alignment:
Q  212 gtatcacttacgtcatttaagttatttaattataaca 248  Q
    |||||||||||||| ||||||||||||||| ||||||    
T  1630048 gtatcacttacgtcttttaagttatttaatcataaca 1630012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 9e-30; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 17 - 153
Target Start/End: Complemental strand, 16841003 - 16840857
Alignment:
Q  17 ataagataacaaattcatttaagtagcaatcacagtgagtaatgtgcttaaaa----atacacctgaaatgaagaaaat------aacattaattgtatt 106  Q
    ||||||||||||||||||||||||| |||||||| ||| |||| |||||||||    ||||||||||||||||||||||      |||||||| ||||||    
T  16841003 ataagataacaaattcatttaagtaccaatcacaatgaataatttgcttaaaaatatatacacctgaaatgaagaaaataataacaacattaaatgtatt 16840904  T
Q  107 tagaatcggagacttagacttcttcaaatgtacatactttaaagagc 153  Q
    ||||| |||||||||||||||| |||| | | |||||||||||||||    
T  16840903 tagaagcggagacttagacttcgtcaactatccatactttaaagagc 16840857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 213 - 253
Target Start/End: Original strand, 31095092 - 31095132
Alignment:
Q  213 tatcacttacgtcatttaagttatttaattataacaagtta 253  Q
    ||||||||||||| |||||||||||||||||||||||||||    
T  31095092 tatcacttacgtcctttaagttatttaattataacaagtta 31095132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 213 - 255
Target Start/End: Original strand, 17411089 - 17411131
Alignment:
Q  213 tatcacttacgtcatttaagttatttaattataacaagttagt 255  Q
    |||||||||||||||||||||||||||||| ||||||||||||    
T  17411089 tatcacttacgtcatttaagttatttaattgtaacaagttagt 17411131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 212 - 255
Target Start/End: Complemental strand, 196287 - 196244
Alignment:
Q  212 gtatcacttacgtcatttaagttatttaattataacaagttagt 255  Q
    ||||||||||||||||||||||||||||||| ||| || |||||    
T  196287 gtatcacttacgtcatttaagttatttaattgtaataatttagt 196244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 213 - 258
Target Start/End: Original strand, 18080600 - 18080645
Alignment:
Q  213 tatcacttacgtcatttaagttatttaattataacaagttagttat 258  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||    
T  18080600 tatcacttacgtcatttaagttatttaattgtaataagttagttat 18080645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 212 - 255
Target Start/End: Complemental strand, 44291463 - 44291420
Alignment:
Q  212 gtatcacttacgtcatttaagttatttaattataacaagttagt 255  Q
    |||||||||| ||| |||||||||||||||| ||||||||||||    
T  44291463 gtatcacttatgtcctttaagttatttaattgtaacaagttagt 44291420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 250
Target Start/End: Complemental strand, 12422390 - 12422352
Alignment:
Q  212 gtatcacttacgtcatttaagttatttaattataacaag 250  Q
    |||||||||||||| |||||||||||||||| |||||||    
T  12422390 gtatcacttacgtcttttaagttatttaattttaacaag 12422352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 255
Target Start/End: Original strand, 32857805 - 32857837
Alignment:
Q  223 gtcatttaagttatttaattataacaagttagt 255  Q
    |||||||||||||||||||| ||||||||||||    
T  32857805 gtcatttaagttatttaattgtaacaagttagt 32857837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University