View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5288_high_25 (Length: 315)
Name: NF5288_high_25
Description: NF5288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5288_high_25 |
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Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 44 - 300
Target Start/End: Original strand, 53367043 - 53367299
Alignment:
| Q |
44 |
gtgtaagttgatttccctgctcatcttcatcagcaattacaattcttaaagcagcataattaggtggaggactccatgtcttccttgtactagttgttgt |
143 |
Q |
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| T |
53367043 |
gtgtaagttgatttccctgctcatcttcatcagcaattacaattcttaaagcagcataattaggtggaggactccatgtcttccttgtactagttgttgt |
53367142 |
T |
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| Q |
144 |
atctgtttgataaactacatcatcactatttctagaatcggcatctgcttttatttctattgcgtaatctttgtctttgttaacagcaacagcatccaca |
243 |
Q |
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| T |
53367143 |
atctgtttgataaactacatcatcactatttctagaatcggcatctgcttttatttctattgcgtaatctctgtctttgttaacggcaacagcatccaca |
53367242 |
T |
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| Q |
244 |
gaagccttttcattagtagaaccatcccagcggtaaaaagcatttacatttacattt |
300 |
Q |
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| T |
53367243 |
gaagccttttcattagtagaaccatcccaacggtaaaaagcatttacatttacattt |
53367299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 284 - 314
Target Start/End: Original strand, 53367289 - 53367319
Alignment:
| Q |
284 |
catttacatttacattttcatcttctttgct |
314 |
Q |
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| T |
53367289 |
catttacatttacattttcatcttctttgct |
53367319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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