View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5288_high_3 (Length: 412)
Name: NF5288_high_3
Description: NF5288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5288_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 180 - 409
Target Start/End: Original strand, 34899746 - 34899975
Alignment:
| Q |
180 |
gtcagtgatatcatctgcacaaattcacataaaattttgtagttggaagatacatacctttcatgtttggtgagaatggaaggaaaattttgagactata |
279 |
Q |
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| T |
34899746 |
gtcagtgatatcatctgcacaaattcacataaaattttgtagttggaagatacatacctttcatgtttggtgagaatggaaggaaaattttgagactata |
34899845 |
T |
|
| Q |
280 |
aggttgcatacacgcagggggagacacaatttagcttttgttgacatcaaatagcgagagaagaactaaagagagatgtgtttatatgcatataggtaaa |
379 |
Q |
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| T |
34899846 |
aggttgcatacacgcaggggaagacacaatttagcttttgttgacatcaaatagcgagagaagaactaaagagagatgtgtttatatgcatataggtaaa |
34899945 |
T |
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| Q |
380 |
gtttggtagtttcaactttcaagttgagat |
409 |
Q |
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| T |
34899946 |
gtttggtagtttcaactttcaagttgagat |
34899975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 113; Significance: 4e-57; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 30 - 142
Target Start/End: Original strand, 44009006 - 44009118
Alignment:
| Q |
30 |
catttgtttgagagatccatcaacatgatgagatatcacatcttttgaagatccaacaaattttccacctatgaacactgctggaactgaagggttacat |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44009006 |
catttgtttgagagatccatcaacatgatgagatatcacatcttttgaagatccaacaaattttccacctatgaacactgctggaactgaagggttacat |
44009105 |
T |
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| Q |
130 |
ccaaaattacccc |
142 |
Q |
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| T |
44009106 |
ccaaaattacccc |
44009118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 30 - 142
Target Start/End: Original strand, 44005080 - 44005192
Alignment:
| Q |
30 |
catttgtttgagagatccatcaacatgatgagatatcacatcttttgaagatccaacaaattttccacctatgaacactgctggaactgaagggttacat |
129 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44005080 |
catttgtttgagtgatccatcaacatgatgagatatcacatcttttgaggatcctacaaattttccacctatgaacactgctggaactgaagggttacat |
44005179 |
T |
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| Q |
130 |
ccaaaattacccc |
142 |
Q |
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| T |
44005180 |
ccaaaattacccc |
44005192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 30 - 133
Target Start/End: Complemental strand, 39846907 - 39846804
Alignment:
| Q |
30 |
catttgtttgagagatccatcaacatgatgagatatcacatcttttgaagatccaacaaattttccacctatgaacactgctggaactgaagggttacat |
129 |
Q |
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|||||||||||| ||||||||||||||| ||||||||||||| ||||| || || |||||||||||||| |||||||||||||| ||||||||||||||| |
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| T |
39846907 |
catttgtttgagtgatccatcaacatgaagagatatcacatcctttgatgaccctacaaattttccaccaatgaacactgctggcactgaagggttacat |
39846808 |
T |
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| Q |
130 |
ccaa |
133 |
Q |
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|||| |
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| T |
39846807 |
ccaa |
39846804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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