View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5288_high_5 (Length: 387)
Name: NF5288_high_5
Description: NF5288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5288_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 165; Significance: 4e-88; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 186 - 358
Target Start/End: Original strand, 33513555 - 33513727
Alignment:
| Q |
186 |
ccatttcatccccttcaccaaatccccaaaaaccctaaccctaaacccctttcaatggaagatttcaaccaccacctctctgccctctctgcctccctcc |
285 |
Q |
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| T |
33513555 |
ccatttcatccccttcaccaaatccccaaaaaccctaaccctaaacccctttcaatggaagatttcaaccaccacctctccgccctctccgcctccctcc |
33513654 |
T |
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| Q |
286 |
aatccatccccacctccgactccttccgtttccactacaacctccccgaattccgtcacctcatcgaccaact |
358 |
Q |
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| T |
33513655 |
aatccatccccacctccgactccttccgtttccactacaacctccccgaattccgtcacctcatcgaccaact |
33513727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 3 - 115
Target Start/End: Original strand, 44009006 - 44009118
Alignment:
| Q |
3 |
catttgtttgagagatccatcaacatgatgagatatcacatcttttgaagatccaacaaattttccacctatgaacactgctggaactgaagggttacat |
102 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44009006 |
catttgtttgagagatccatcaacatgatgagatatcacatcttttgaagatccaacaaattttccacctatgaacactgctggaactgaagggttacat |
44009105 |
T |
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| Q |
103 |
ccaaaattacccc |
115 |
Q |
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| T |
44009106 |
ccaaaattacccc |
44009118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 3 - 115
Target Start/End: Original strand, 44005080 - 44005192
Alignment:
| Q |
3 |
catttgtttgagagatccatcaacatgatgagatatcacatcttttgaagatccaacaaattttccacctatgaacactgctggaactgaagggttacat |
102 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44005080 |
catttgtttgagtgatccatcaacatgatgagatatcacatcttttgaggatcctacaaattttccacctatgaacactgctggaactgaagggttacat |
44005179 |
T |
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| Q |
103 |
ccaaaattacccc |
115 |
Q |
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||||||||||||| |
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| T |
44005180 |
ccaaaattacccc |
44005192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 186 - 350
Target Start/End: Original strand, 34121033 - 34121195
Alignment:
| Q |
186 |
ccatttcatccccttcaccaaatccccaaaaaccctaaccctaaacccctttcaatggaagatttcaaccaccacctctctgccctctctgcctccctcc |
285 |
Q |
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|||||||| ||| ||| |||||| |||||||||||||||||| || ||| | |||||||||| ||||||||||||||||| ||||||| ||||||||| |
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| T |
34121033 |
ccatttcaccccgttcgccaaattcccaaaaaccctaacccttaaacccctccaatggaagacttcaaccaccacctctccgccctcta--cctccctcc |
34121130 |
T |
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| Q |
286 |
aatccatccccacctccgactccttccgtttccactacaacctccccgaattccgtcacctcatc |
350 |
Q |
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|||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |||||| |
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| T |
34121131 |
aatccatccccacctccgactcattccgtttccactactacctccccgaattccgtcatctcatc |
34121195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 3 - 106
Target Start/End: Complemental strand, 39846907 - 39846804
Alignment:
| Q |
3 |
catttgtttgagagatccatcaacatgatgagatatcacatcttttgaagatccaacaaattttccacctatgaacactgctggaactgaagggttacat |
102 |
Q |
| |
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|||||||||||| ||||||||||||||| ||||||||||||| ||||| || || |||||||||||||| |||||||||||||| ||||||||||||||| |
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| T |
39846907 |
catttgtttgagtgatccatcaacatgaagagatatcacatcctttgatgaccctacaaattttccaccaatgaacactgctggcactgaagggttacat |
39846808 |
T |
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| Q |
103 |
ccaa |
106 |
Q |
| |
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|||| |
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| T |
39846807 |
ccaa |
39846804 |
T |
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