View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5288_high_8 (Length: 378)
Name: NF5288_high_8
Description: NF5288
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5288_high_8 |
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Alignment Details
Target: chr5 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 20 - 357
Target Start/End: Original strand, 20648763 - 20649100
Alignment:
| Q |
20 |
gacatcatcaggagcagtatactcgggaacatgatcagtatgcaaaacttcaatgctcttattgaagcgtttaataccatatctcataaagatgtaacca |
119 |
Q |
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|||||||||||||||||||||||| |||||||||||||||| |||||||| |||||| |||||||| ||||||| ||| | | ||||||||||||| |
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| T |
20648763 |
gacatcatcaggagcagtatactccggaacatgatcagtatacaaaactttcatgctcctattgaagggtttaatttcatctaccccaaagatgtaacca |
20648862 |
T |
|
| Q |
120 |
tcatcgatatcccaattgcgaaacataccagtatcaaatttcggtagaatttgttcccctcctacattcaatctatacaaagtttccatagctgaatcat |
219 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20648863 |
tcatcgatatcccaattgcgaaacataccagtatcatatttcggtagaatttgttcccctcctacattcaatctatacaaagtttccatagctgaatcat |
20648962 |
T |
|
| Q |
220 |
tataaatgtaaacaacattcgcatcctggccaactaaagcaataggggaatcatcaccaccaatgtataaaccatttggtattgaaacaacttcaatacc |
319 |
Q |
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|||||||||||||||| || | ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20648963 |
tataaatgtaaacaacttttgtatcgtggccaactaaaggaataggggaatcatcaccaccaatgtataaaccatttggtattgaaacaacttcaatacc |
20649062 |
T |
|
| Q |
320 |
attcacaaatgcatatgcatcagaatcatttgatgatg |
357 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
20649063 |
attcacaaatgcatatgcatcagaatcatttgatgatg |
20649100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 20 - 357
Target Start/End: Original strand, 20632667 - 20633001
Alignment:
| Q |
20 |
gacatcatcaggagcagtatactcgggaacatgatcagtatgcaaaacttcaatgctcttattgaagcgtttaataccatatctcataaagatgtaacca |
119 |
Q |
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|||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||||||| |||||| | |||||| | ||||||||||||| |
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| T |
20632667 |
gacatcatcaggagcagtatactccggaacatgatcagtatacaaaactttcatgctcttattgaagtgtttaaaatcatatcccccaaagatgtaacca |
20632766 |
T |
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| Q |
120 |
tcatcgatatcccaattgcgaaacataccagtatcaaatttcggtagaatttgttcccctcctacattcaatctatacaaagtttccatagctgaatcat |
219 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20632767 |
tcatcgatatcccaattgcgaaacataccagtatcatatttcggtagaatttgttcccctcctacattcaatctatacaaagtttccatagctgaatcat |
20632866 |
T |
|
| Q |
220 |
tataaatgtaaacaacattcgcatcctggccaactaaagcaataggggaatcatcaccaccaatgtataaaccatttggtattgaaacaacttcaatacc |
319 |
Q |
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||||||||||||||| | | ||| |||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20632867 |
tataaatgtaaacaa---ttgtatcgtggccagcgaaaggaataggggaatcatcaccaccaatgtataaaccatttggtattgaaacaacttcaatacc |
20632963 |
T |
|
| Q |
320 |
attcacaaatgcatatgcatcagaatcatttgatgatg |
357 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
20632964 |
attcacaaatgcatatgcatcagaatcatttgatgatg |
20633001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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