View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5289_high_3 (Length: 242)
Name: NF5289_high_3
Description: NF5289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5289_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 38269332 - 38269108
Alignment:
| Q |
1 |
tcttcttatcagatggtctcaaattgcggcgcaattgccggggaggactgacaatgaaataaagaatctatggaactcttgtttgaagaagagactgagg |
100 |
Q |
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| T |
38269332 |
tcttcttatcagatggtctcaaattgcggcgcaattgccggggaggactgacaatgaaataaagaatctatggaactcttgtttgaagaagagactgagg |
38269233 |
T |
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| Q |
101 |
caaaaaggtatagatcctgtgactcataaaccattgtctgaggttgagaataatggagaggaaaatgctaataagagtcaagagaaagcaccagatatat |
200 |
Q |
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| T |
38269232 |
caaaaaggtatagatcctgtgactcataaaccattgtctgaggttgagaataatggagaggaaaatgctaataagagtcgagagaaagcaccagatatat |
38269133 |
T |
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| Q |
201 |
tattatccaatgaattgaacctttt |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
38269132 |
tattatccaatgaattgaacctttt |
38269108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 93
Target Start/End: Original strand, 37963053 - 37963139
Alignment:
| Q |
7 |
tatcagatggtctcaaattgcggcgcaattgccggggaggactgacaatgaaataaagaatctatggaactcttgtttgaagaagag |
93 |
Q |
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| T |
37963053 |
tatcagatggtctcagattgcagcacaattaccaggaagaactgacaatgagattaaaaatctatggaattcatgtctcaagaagag |
37963139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 11 - 144
Target Start/End: Original strand, 45438303 - 45438436
Alignment:
| Q |
11 |
agatggtctcaaattgcggcgcaattgccggggaggactgacaatgaaataaagaatctatggaactcttgtttgaagaagagactgaggcaaaaaggta |
110 |
Q |
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| T |
45438303 |
agatggtcacaaattgctgcacaattgccagggaggactgataatgaaataaagaatctttggaattcttgcttaaagaagaaactgagacaaaagggta |
45438402 |
T |
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| Q |
111 |
tagatcctgtgactcataaaccattgtctgaggt |
144 |
Q |
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| T |
45438403 |
tagaccctgtcactcataaaccactttctgaggt |
45438436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 225
Target Start/End: Original strand, 8061430 - 8061470
Alignment:
| Q |
185 |
aaagcaccagatatattattatccaatgaattgaacctttt |
225 |
Q |
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| T |
8061430 |
aaagcaccagagatattactatccaatgaattgaacctttt |
8061470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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