View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5289_high_8 (Length: 232)
Name: NF5289_high_8
Description: NF5289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5289_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 16 - 217
Target Start/End: Complemental strand, 30469273 - 30469072
Alignment:
| Q |
16 |
gagagtcaaagattagagaattctcaatttatccttactctctaaatggtgatttgttgaatggggaaaaaactacttggaagaaaattttaatttgaaa |
115 |
Q |
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| T |
30469273 |
gagagtcaaagattagagaattctcaatttattcttactctctaaatggtgatttgttgaatggggaaaaaactacttcgaaggaaattttaatttgaaa |
30469174 |
T |
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| Q |
116 |
gcaaaatatgtaaaaagagatggtgattttaactcattgttgttttattcaagaaaggagttcaagtatacatttccaatggtggaaagacatttgtgat |
215 |
Q |
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||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |
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| T |
30469173 |
gcaaaatatgtaaaaagagatggtgattttagctcattattgttttattcaagaaaggagtccaagtatacatttccaatggtagaaagacatttgtgat |
30469074 |
T |
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| Q |
216 |
ct |
217 |
Q |
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|| |
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| T |
30469073 |
ct |
30469072 |
T |
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