View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5289_low_10 (Length: 211)

Name: NF5289_low_10

Description: NF5289

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF5289_low_10

[»] chr2 (1 HSPs)

[»] chr4 (1 HSPs)

Target: chr2 (Bit Score: 138; Significance: 3e-72; HSPs: 1)

Name: chr2

Description:

Target: chr2; HSP #1

Raw Score: 138; E-Value: 3e-72

Query Start/End: Original strand, 18 - 195

Target Start/End: Original strand, 36337877 - 36338067

Alignment:

Q	18	cagtgatgataactcgtgccaaacaacaacagacatgcaaatggttcaaccttctcagaatcatttcacaaatttctgatagatgtataatta-------	110	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	36337877	cagtgatgataactcatgccaaacaacaacagacatgcaaatggttcaaccttctcagaatcatttcacaaatttctgatagatgtataattaaagtcct	36337976	T

Q	111	--aagtggttcttgtttggctgc----tttagaaaatgtcagttgttatctaggaaaaattatttatttattttacttttcaatcatctgt	195	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	36337977	acaagtggttcttgtttggctgcttaatttagaaaatgtcagttgttatctaggaaaaattatttatttattttacttttcaatcatctgt	36338067	T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 40; E-Value: 0.00000000000008

Query Start/End: Original strand, 21 - 96

Target Start/End: Original strand, 19284148 - 19284223

Alignment:

Q	21	tgatgataactcgtgccaaacaacaacagacatgcaaatggttcaaccttctcagaatcatttcacaaatttctga	96	Q
		\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|
T	19284148	tgatgataactcatgccaagcaaccacagaattgcaaatggttcaaccttctcatagtcatttctcaagtttctga	19284223	T

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