View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5289_low_2 (Length: 264)
Name: NF5289_low_2
Description: NF5289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5289_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-132; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 20492664 - 20492403
Alignment:
| Q |
1 |
agatgattcttttgaatccaaccaagccttgatattcacccaatccgggtcattttcttcttcctcgttgtctcttatctgcatggatggtggaagtatt |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
20492664 |
agatgattcttttgaatccaaccaagccttgattttcacccaatcagggtcgttttcttcttcctcattgtctcttatctgcatggatggtggaagtatt |
20492565 |
T |
|
| Q |
101 |
ccaactggaaccacaggaaccttgtatcgatccgaaatataatctaaccattgaccttcaagttctctagtggctctaataagaataaggtcacaactcg |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
20492564 |
ccaactggaaccacaggaaccttgtatcgatccgaaatataatctaaccattgaccttcaagttctctagtggctctgataagaataaggtcacaactcg |
20492465 |
T |
|
| Q |
201 |
agtaaactttgtcgaaattaaaactcgctgtttttcctccagaaacatttttaaaaagtgat |
262 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
20492464 |
agtaaactttgtcgaaattaaaactcgctgtttttcctccggaaacatttttaaaaagtgat |
20492403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 1361879 - 1361668
Alignment:
| Q |
1 |
agatgattcttttgaatccaaccaagccttgatattcacccaatccgggtcattttcttcttcctcgttgtctcttatctgcatggatggtggaagtatt |
100 |
Q |
| |
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|||||||||| ||||||||||||| | ||||| ||||||||||| || | || ||||| || || | ||||||||||||||| ||||||||||| | |
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| T |
1361879 |
agatgattctcttgaatccaaccaccctttgattttcacccaatcaggattgttctcttcctcttcatcgtctcttatctgcatagatggtggaagcaac |
1361780 |
T |
|
| Q |
101 |
ccaactggaaccacaggaaccttgtatcgatccgaaatataatctaaccattgaccttcaagttctctagtggctctaataagaataaggtcacaactcg |
200 |
Q |
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| T |
1361779 |
ccaacaggaacgacaggaaccttgtactgttcagagatataatccaaccattcaccttcaagttctcttgaggttctgagaagaaaaagatcacaactcg |
1361680 |
T |
|
| Q |
201 |
agtaaactttgt |
212 |
Q |
| |
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| ||| |||||| |
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| T |
1361679 |
aataagctttgt |
1361668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 1354993 - 1354826
Alignment:
| Q |
1 |
agatgattcttttgaatccaaccaagccttgatattcacccaatccgggtcattttcttcttcctcgttgtctcttatctgcatggatggtggaagtatt |
100 |
Q |
| |
|
|||||||||| ||||||||||||| | ||||| ||||||||||| || | || ||||| || || | |||||||||||||| || ||||||| | |
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|
| T |
1354993 |
agatgattctcttgaatccaaccaccctttgattttcacccaatcaggattgttctcttcctcttcatcatctcttatctgcatagaaggtggaatcaac |
1354894 |
T |
|
| Q |
101 |
ccaactggaaccacaggaaccttgtatcgatccgaaatataatctaaccattgaccttcaagttctct |
168 |
Q |
| |
|
||||| ||||| |||||||| ||||| | || || |||||||| ||||||| ||||||||| ||||| |
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|
| T |
1354893 |
ccaacaggaacaacaggaacattgtactgttcagagatataatccaaccattcaccttcaagctctct |
1354826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 29954529 - 29954317
Alignment:
| Q |
1 |
agatgattcttttgaatccaaccaagccttgatattcacccaatccgggtcattttcttcttcctcgttgtctcttatctgcatggatggtggaagtatt |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| ||||||||| |||| ||||||| || |||| ||||||||||||||||||||||||||| ||| |
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| T |
29954529 |
agatgattcttttgaatccaaccatgccttgattttcacccaactagggttgctttcttcctcttcgtcgtctcttatctgcatggatggtggaagcatt |
29954430 |
T |
|
| Q |
101 |
ccaactggaaccacaggaaccttgtatcgatccgaaatataatctaaccattgaccttcaagttctctagtggctctaataagaataaggtcacaactcg |
200 |
Q |
| |
|
|||||||||||||||||||| |||||| | | ||||||||||||||||||| ||||||||||||||||| || ||| ||||||| |||||||||||| | |
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|
| T |
29954429 |
ccaactggaaccacaggaactttgtattggtaagaaatataatctaaccattcaccttcaagttctctagaggttcttataagaaaaaggtcacaacttg |
29954330 |
T |
|
| Q |
201 |
agtaaactttgtc |
213 |
Q |
| |
|
|||| |||||||| |
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|
| T |
29954329 |
agtatactttgtc |
29954317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 51369924 - 51370108
Alignment:
| Q |
1 |
agatgattcttttgaatccaaccaagccttgatattcacccaatccgggtcattttcttcttcctcgttgtctcttatctgcatggatggtggaagtatt |
100 |
Q |
| |
|
||||||||||||||| |||||||| |||||||| | |||||||| |||| ||||| || | | || ||||||||| |||| |||||||||||| | | |
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|
| T |
51369924 |
agatgattcttttgagtccaaccatgccttgatgtggacccaatcagggttgttttcatcatgttggtcgtctcttatatgcaaggatggtggaagaact |
51370023 |
T |
|
| Q |
101 |
ccaactggaaccacaggaaccttgtatcgatccgaaatataatctaaccattgaccttcaagttctctagtggctctaataagaa |
185 |
Q |
| |
|
||||| |||| |||||||||||||||||| | |||| ||||||||||||| |||||||||||||||||| || ||||||||||| |
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|
| T |
51370024 |
ccaacaggaagcacaggaaccttgtatcggtgagaaagataatctaaccatggaccttcaagttctctagaggttctaataagaa |
51370108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 89; Significance: 6e-43; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 14588952 - 14588760
Alignment:
| Q |
1 |
agatgattcttttgaatccaaccaagccttgatattcacccaatccgggtcattttcttcttcctcgttgtctcttatctgcatggatggtggaagtatt |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||||||| || || | ||||| ||||| |||| |||||||||||||| | ||||||||| | | |
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| T |
14588952 |
agatgattcttttgaatccaaccatgccttgattttcacccattcaggattcttttcatcttcttcgtcatctcttatctgcataggtggtggaagcaat |
14588853 |
T |
|
| Q |
101 |
ccaactggaaccacaggaaccttgtatcgatccgaaatataatctaaccattgaccttcaagttctctagtggctctaataagaataaggtca |
193 |
Q |
| |
|
|| || ||||||||||||||||||||| | || ||||||||||||||||||| ||||||||||||||||| || ||| | ||||| ||||||| |
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|
| T |
14588852 |
ccgaccggaaccacaggaaccttgtattggtcagaaatataatctaaccattcaccttcaagttctctagaggttctgaaaagaaaaaggtca |
14588760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 14622610 - 14622418
Alignment:
| Q |
1 |
agatgattcttttgaatccaaccaagccttgatattcacccaatccgggtcattttcttcttcctcgttgtctcttatctgcatggatggtggaagtatt |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||||||| || || | ||||| ||||| |||| |||||||||||||| | ||||||||| | | |
|
|
| T |
14622610 |
agatgattcttttgaatccaaccatgccttgattttcacccagtcaggattcttttcatcttcttcgtcatctcttatctgcataggtggtggaagcaat |
14622511 |
T |
|
| Q |
101 |
ccaactggaaccacaggaaccttgtatcgatccgaaatataatctaaccattgaccttcaagttctctagtggctctaataagaataaggtca |
193 |
Q |
| |
|
|| || ||||||||||||||||||||| | || ||||||||||||||||||| ||||||||||||||||| || ||| | ||||| ||||||| |
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|
| T |
14622510 |
ccgaccggaaccacaggaaccttgtattggtcagaaatataatctaaccattcaccttcaagttctctagaggttctgaaaagaaaaaggtca |
14622418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 56 - 168
Target Start/End: Complemental strand, 12846452 - 12846340
Alignment:
| Q |
56 |
tcttcttcctcgttgtctcttatctgcatggatggtggaagtattccaactggaaccacaggaaccttgtatcgatccgaaatataatctaaccattgac |
155 |
Q |
| |
|
||||| ||||| | ||||||||||||||| ||||||||||| | ||||| |||| |||||| |||||||| | || || |||||||| ||||||| || |
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|
| T |
12846452 |
tcttcctcctcatcgtctcttatctgcatagatggtggaagcaacccaacaagaacgacaggagccttgtattgttcagagatataatccaaccattcac |
12846353 |
T |
|
| Q |
156 |
cttcaagttctct |
168 |
Q |
| |
|
|||||| ||||| |
|
|
| T |
12846352 |
tttcaagctctct |
12846340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 5 - 166
Target Start/End: Complemental strand, 11531838 - 11531678
Alignment:
| Q |
5 |
gattcttttgaatccaaccaagccttgatattcacccaatccgggtcattttcttcttcctcgttgtctcttatctgcatggatggtggaagtattccaa |
104 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||| |||||| ||| |||||||| | |||| |||||||||||||||||||||||||| | ||||| |
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|
| T |
11531838 |
gattcttttgaatccaaccatgccttgattttcatccaatcaaggttgttttcttcctt-tcgtcttctcttatctgcatggatggtggaagcaatccaa |
11531740 |
T |
|
| Q |
105 |
ctggaaccacaggaaccttgtatcgatccgaaatataatctaaccattgaccttcaagttct |
166 |
Q |
| |
|
||||||||||| ||||||| ||| | ||||||||||||||||||| ||||||||||||| |
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|
| T |
11531739 |
ctggaaccacacgaaccttatattggctagaaatataatctaaccattcaccttcaagttct |
11531678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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