View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5289_low_5 (Length: 240)
Name: NF5289_low_5
Description: NF5289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5289_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 20492989 - 20493210
Alignment:
| Q |
1 |
ttgttttcaagagaactagaagaaaggaaattggctattgaggtaccaaggaatgagcaagatgggtcctttactagggactctatagccaaaacattga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20492989 |
ttgttttcaagagaactagaagaaaggaaattggctattgaggtaccaaggaatgagcaagatgggtcctttactagggactctatagccaaaacattga |
20493088 |
T |
|
| Q |
101 |
ggttggcaatagtggatgaggaaggaagtatctataggaaaaatgccaaagatatgggaaaggttttcagttcaaaagatcttcacaatgaatacattaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |
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|
| T |
20493089 |
ggttggcaatagtggatgaggaaggaagtatctatagaaaaaatgccaaagatatgggaaagattttcggttcaaaagatcttcacaatgaatacattaa |
20493188 |
T |
|
| Q |
201 |
aggtttcattgatgctctccaa |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
20493189 |
aggtttcattgatgctctccaa |
20493210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 32 - 194
Target Start/End: Original strand, 1355349 - 1355511
Alignment:
| Q |
32 |
tggctattgaggtaccaaggaatgagcaagatgggtcctttactagggactctatagccaaaacattgaggttggcaatagtggatgaggaaggaagtat |
131 |
Q |
| |
|
||||| |||| |||||||||| |||| |||||||||| ||||||||||||||| | || | |||||||||||||||| ||||||||||||||||||| |
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|
| T |
1355349 |
tggctgttgaagtaccaaggagtgaggaagatgggtcttttactagggactctgtggctcactcattgaggttggcaattgtggatgaggaaggaagtag |
1355448 |
T |
|
| Q |
132 |
ctataggaaaaatgccaaagatatgggaaaggttttcagttcaaaagatcttcacaatgaata |
194 |
Q |
| |
|
| ||||| ||||| ||||| |||| ||||||||||||||||||||| |||||||| |||| |
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|
| T |
1355449 |
tttcaggaacaatgctaaagagttggggaaggttttcagttcaaaagatattcacaatcaata |
1355511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 32 - 194
Target Start/End: Original strand, 1362235 - 1362397
Alignment:
| Q |
32 |
tggctattgaggtaccaaggaatgagcaagatgggtcctttactagggactctatagccaaaacattgaggttggcaatagtggatgaggaaggaagtat |
131 |
Q |
| |
|
||||| ||||||||||||||| |||| |||||||||| ||||||||||||||| | || | |||||||||||||||| ||||||||||||||||||| |
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|
| T |
1362235 |
tggctgttgaggtaccaaggagtgaggaagatgggtcttttactagggactctgtggctcactcattgaggttggcaattgtggatgaggaaggaagtag |
1362334 |
T |
|
| Q |
132 |
ctataggaaaaatgccaaagatatgggaaaggttttcagttcaaaagatcttcacaatgaata |
194 |
Q |
| |
|
| ||||| ||||| ||||| |||| || |||||||||||||||||| |||| ||| |||| |
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|
| T |
1362335 |
tttcaggaacaatgctaaagagttggggaaagttttcagttcaaaagatattcataatcaata |
1362397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 158; Significance: 3e-84; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 29954854 - 29955071
Alignment:
| Q |
1 |
ttgttttcaagagaactagaagaaaggaaattggctattgaggtaccaaggaatgagcaagatgggtcctttactagggactctatagccaaaacattga |
100 |
Q |
| |
|
||||||||||||| ||||||||||| ||| |||| |||||||||||||||| |||||||||||||||||||||||||||||| |||||| ||||||||| |
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|
| T |
29954854 |
ttgttttcaagagcactagaagaaaagaaggtggcaattgaggtaccaaggagtgagcaagatgggtcctttactagggactcgatagcccaaacattga |
29954953 |
T |
|
| Q |
101 |
ggttggcaatagtggatgaggaaggaagtatctataggaaaaatgccaaagatatgggaaaggttttcagttcaaaagatcttcacaatgaatacattaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29954954 |
ggttggcaatagtggatgaggaaggaagtatgtatcggaataatgccaaagatatggaaaaggttttcagttcaaaagatcttcacaatgaatacattaa |
29955053 |
T |
|
| Q |
201 |
aggtttcattgatgctct |
218 |
Q |
| |
|
|| | |||||| |||||| |
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|
| T |
29955054 |
agatgtcattgctgctct |
29955071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 15 - 202
Target Start/End: Complemental strand, 51369585 - 51369398
Alignment:
| Q |
15 |
actagaagaaaggaaattggctattgaggtaccaaggaatgagcaagatgggtcctttactagggactctatagccaaaacattgaggttggcaatagtg |
114 |
Q |
| |
|
||||||||||| |||| ||||| |||| |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |
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|
| T |
51369585 |
actagaagaaaagaaagtggctgttgaagtaccaaggagtgagcaagatgggtcctttactagggactctgtagccaaaacattgaggttggtaatagtg |
51369486 |
T |
|
| Q |
115 |
gatgaggaaggaagtatctataggaaaaatgccaaagatatgggaaaggttttcagttcaaaagatcttcacaatgaatacattaaag |
202 |
Q |
| |
|
||||||||||| || | | ||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||| |
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|
| T |
51369485 |
gatgaggaaggtagcacgtgcaggaaaaatgctaaagatatgggaaaaattttcagttcaaaagatcttcacaatcaatacattaaag |
51369398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 134; Significance: 7e-70; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 11532167 - 11532384
Alignment:
| Q |
1 |
ttgttttcaagagaactagaagaaaggaaattggctattgaggtaccaaggaatgagcaagatgggtcctttactagggactctatagccaaaacattga |
100 |
Q |
| |
|
||||| ||||||| ||||||||||| |||| ||||||||||||||||||||| |||| |||| |||||||||||||||||||| ||||||||||||||| |
|
|
| T |
11532167 |
ttgttctcaagagtactagaagaaaagaaagtggctattgaggtaccaaggagtgagaaagacgggtcctttactagggactcagtagccaaaacattga |
11532266 |
T |
|
| Q |
101 |
ggttggcaatagtggatgaggaaggaagtatctataggaaaaatgccaaagatatgggaaaggttttcagttcaaaagatcttcacaatgaatacattaa |
200 |
Q |
| |
|
|||||| |||| |||||||||||||||||| || || || |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |
|
|
| T |
11532267 |
ggttggtaataatggatgaggaaggaagtacgtacagaaacaatgccaaagatatgggaaaggttttcagttcaaaagatcttcacaatcaatacattga |
11532366 |
T |
|
| Q |
201 |
aggtttcattgatgctct |
218 |
Q |
| |
|
|| ||| |||| |||||| |
|
|
| T |
11532367 |
agattttattgttgctct |
11532384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 119; Significance: 6e-61; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 14622935 - 14623145
Alignment:
| Q |
1 |
ttgttttcaagagaactagaagaaaggaaattggctattgaggtaccaaggaatgagcaagatgggtcctttactagggactctatagccaaaacattga |
100 |
Q |
| |
|
|||||| |||||| ||||||||||| |||| ||||| ||||||||||||||| ||||| ||||||| || ||| |||||||| | | || |||||||||| |
|
|
| T |
14622935 |
ttgtttgcaagagtactagaagaaaagaaagtggctgttgaggtaccaaggagtgagccagatggggccattaatagggactgtgttgctaaaacattga |
14623034 |
T |
|
| Q |
101 |
ggttggcaatagtggatgaggaaggaagtatctataggaaaaatgccaaagatatgggaaaggttttcagttcaaaagatcttcacaatgaatacattaa |
200 |
Q |
| |
|
|||||| |||||||||||||||||||||||| || ||||| ||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||| |
|
|
| T |
14623035 |
ggttggtaatagtggatgaggaaggaagtatttacaggaacaatgccaaagacatgggaaaggttgtgagttcaaaagatcttcacaatgaatacattaa |
14623134 |
T |
|
| Q |
201 |
aggtttcattg |
211 |
Q |
| |
|
| |||||||| |
|
|
| T |
14623135 |
aaatttcattg |
14623145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 14589277 - 14589477
Alignment:
| Q |
1 |
ttgttttcaagagaactagaagaaaggaaattggctattgaggtaccaaggaatgagcaagatgggtcctttactagggactctatagccaaaacattga |
100 |
Q |
| |
|
|||||| |||||| ||||||||||| |||| ||||| ||||||||||||||| ||||| ||||||| || ||| |||||||| | | || |||||||||| |
|
|
| T |
14589277 |
ttgtttgcaagagtactagaagaaaagaaagtggctgttgaggtaccaaggagtgagccagatggggccattaatagggactgtgttgctaaaacattga |
14589376 |
T |
|
| Q |
101 |
ggttggcaatagtggatgaggaaggaagtatctataggaaaaatgccaaagatatgggaaaggttttcagttcaaaagatcttcacaatgaatacattaa |
200 |
Q |
| |
|
|||||| |||||||||||||||||||||||| || ||||| ||||||||||| |||||||||||| | |||||||||||||||||||||||||||||||| |
|
|
| T |
14589377 |
ggttggtaatagtggatgaggaaggaagtatttacaggaacaatgccaaagaaatgggaaaggttgtgagttcaaaagatcttcacaatgaatacattaa |
14589476 |
T |
|
| Q |
201 |
a |
201 |
Q |
| |
|
| |
|
|
| T |
14589477 |
a |
14589477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 12846832 - 12847049
Alignment:
| Q |
1 |
ttgttttcaagagaactagaagaaaggaaattggctattgaggtaccaaggaatgagcaagatgggtcctttactagggactctatagccaaaacattga |
100 |
Q |
| |
|
||||||||||||||||||| |||| |||| |||| |||||||| ||||| | |||| | |||||||||||||||||||||| | ||||| |||||||| |
|
|
| T |
12846832 |
ttgttttcaagagaactagctgaaaagaaagtggccattgaggttccaagaagtgaggaggatgggtcctttactagggactttgtagccctaacattga |
12846931 |
T |
|
| Q |
101 |
ggttggcaatagtggatgaggaaggaagtatctataggaaaaatgccaaagatatgggaaaggttttcagttcaaaagatcttcacaatgaatacattaa |
200 |
Q |
| |
|
|||| |||||| |||||| ||||||| ||| || ||||| ||||| ||||| ||||| ||| |||||||||||||||| |||||||| |||||||| | |
|
|
| T |
12846932 |
ggttagcaataatggatgccgaaggaattatttacaggaacaatgcaaaagagatgggcaagattttcagttcaaaagaacttcacaaaaaatacattga |
12847031 |
T |
|
| Q |
201 |
aggtttcattgatgctct |
218 |
Q |
| |
|
|| |||||||| |||||| |
|
|
| T |
12847032 |
agatttcattgctgctct |
12847049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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