View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5289_low_6 (Length: 239)
Name: NF5289_low_6
Description: NF5289
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5289_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 3849120 - 3848916
Alignment:
| Q |
1 |
cttaggaccctattcgaggtcatttggagttgtttcctcaaattaaatgtgaggaaaataatactaatattaaggcttaaattaatgtatttttgtcact |
100 |
Q |
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| T |
3849120 |
cttaggaccctattcgaggtcatttggagttgtttcctcaaattaaatgtgaggaaaataatactaatattaaggcttaaattaatgtatttttgtcact |
3849021 |
T |
|
| Q |
101 |
attttaatataaactgaaataatttagtactccattttttaaatttgggggttttagtccctctgtttcccaaattttacgatctttgcacaacccattt |
200 |
Q |
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| T |
3849020 |
attttaatataaactgaaataatttagtactccattttttaaatttgggggttttagtccctctgtttcccaaattttacgatctttgcacaacccattt |
3848921 |
T |
|
| Q |
201 |
taaag |
205 |
Q |
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||||| |
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| T |
3848920 |
taaag |
3848916 |
T |
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