View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5290-Insertion-11 (Length: 390)
Name: NF5290-Insertion-11
Description: NF5290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5290-Insertion-11 |
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Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 8 - 250
Target Start/End: Complemental strand, 46126331 - 46126089
Alignment:
| Q |
8 |
aattgatcacagagtgcctcgacgcaaccattacacgccaagtacctagcgcaatgtcaatcgtacacttaagtcataagttttcatcacaagataaaat |
107 |
Q |
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| T |
46126331 |
aattgatcacagagtgcctcgacgcaaccattacacgccaagtacctagcgcaatgtcaatcgtacacttaagtcataagttttcatcacaagataaaat |
46126232 |
T |
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| Q |
108 |
gcaaaaggactaaagaatagcattgtaatacaaaccaacttatgaataaatcacaatcccaactcccaggtgtctaagatgcaagtataaaatattttcc |
207 |
Q |
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| T |
46126231 |
gcaaaaggactaaagaataacattgtaatacaaaccaacttatgaataaatcacaatcccaactcccaagtgtctaagatgcaagtataaaatattttcc |
46126132 |
T |
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| Q |
208 |
acaattccagggacacaaacaaaacagtataccccactacatg |
250 |
Q |
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| T |
46126131 |
acaattccagggacacaaacaaaacagtataccccactacatg |
46126089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 8 - 146
Target Start/End: Complemental strand, 46131962 - 46131829
Alignment:
| Q |
8 |
aattgatcacagagtgcctcgacgcaaccattacacgccaagtacctagcgcaatgtcaatcgtacacttaagtcataagttttcatcacaagataaaat |
107 |
Q |
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| T |
46131962 |
aattgatcacagagtgcctcgatgcacccattacgcaccaagtacctagaacattgttaatcgtaca----agtcataagttttcatcacaagataaa-t |
46131868 |
T |
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| Q |
108 |
gcaaaaggactaaagaatagcattgtaatacaaaccaac |
146 |
Q |
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| T |
46131867 |
gcaaaaggactaaagaataacattgtaatacagaccaac |
46131829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 8 - 110
Target Start/End: Complemental strand, 46705054 - 46704956
Alignment:
| Q |
8 |
aattgatcaca-gagtgcctcgacgcaaccattacacgccaagtacctagcgcaatgtcaatcgtacacttaagtcataagttttcatcacaagataaaa |
106 |
Q |
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| T |
46705054 |
aattgatcacaagagtgcctcgatgcacccattagacgccaagtacctagagcattgtcaatcgtacac----gtcataagttttaatcacaaga-aaaa |
46704960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 316 - 365
Target Start/End: Complemental strand, 46126023 - 46125974
Alignment:
| Q |
316 |
caccggaagaatgataacggcgaagaaaatcacgataaaggaaattaaaa |
365 |
Q |
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| T |
46126023 |
caccggaagaatgaaaacggagaagaaaatcacgataaaggaaattaaaa |
46125974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 197 - 238
Target Start/End: Complemental strand, 46131807 - 46131766
Alignment:
| Q |
197 |
aaatattttccacaattccagggacacaaacaaaacagtata |
238 |
Q |
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| T |
46131807 |
aaatattttccacacttcaagggacacaaacaaaacagtata |
46131766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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